Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 18367 | 0.74 | 0.203558 |
Target: 5'- gUGGCGccaucgacAUGGCaGGccaGGCGGcgGCCGCGGCGg -3' miRNA: 3'- -ACCGC--------UACCG-CC---UCGCU--UGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 16523 | 0.75 | 0.174724 |
Target: 5'- aUGGCgGGUGGCGGcaaCGGuccCCACGGCGg -3' miRNA: 3'- -ACCG-CUACCGCCuc-GCUu--GGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 24840 | 0.75 | 0.170287 |
Target: 5'- cGGCGucGGCGGcGCGGGCgGCGGCc -3' miRNA: 3'- aCCGCuaCCGCCuCGCUUGgUGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 30705 | 0.76 | 0.137925 |
Target: 5'- gUGGCGGUGcgaacucccacauGUGGGGCGAGCUcgACGGCa -3' miRNA: 3'- -ACCGCUAC-------------CGCCUCGCUUGG--UGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 28141 | 0.8 | 0.076723 |
Target: 5'- cGGCGgcGGCGGAuCGAGCgGCGGCa -3' miRNA: 3'- aCCGCuaCCGCCUcGCUUGgUGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 2914 | 0.67 | 0.495814 |
Target: 5'- cUGGgGGccUGGCuGGGCGAcggcaccGCCACGcGCGc -3' miRNA: 3'- -ACCgCU--ACCGcCUCGCU-------UGGUGC-CGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 30162 | 0.67 | 0.500713 |
Target: 5'- cGGCGcgGccGCGGAGUGGACCuacgccaagaacccuGaCGGCa -3' miRNA: 3'- aCCGCuaC--CGCCUCGCUUGG---------------U-GCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 26231 | 0.67 | 0.510575 |
Target: 5'- cGGCGAUgcccgcccccuacgcGGUGGGGCaugacGGACUccuCGGCGg -3' miRNA: 3'- aCCGCUA---------------CCGCCUCG-----CUUGGu--GCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 62567 | 0.66 | 0.577413 |
Target: 5'- aGGaGAUGGaacgccgGGAGCGcGCCGaGGCGg -3' miRNA: 3'- aCCgCUACCg------CCUCGCuUGGUgCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 25192 | 0.66 | 0.577413 |
Target: 5'- aGGCcccUGGCGGcgcuGGC-AACgGCGGCGa -3' miRNA: 3'- aCCGcu-ACCGCC----UCGcUUGgUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 46754 | 0.66 | 0.567127 |
Target: 5'- gUGGUGGgaccGGCGcuGCGcGCgCACGGCGu -3' miRNA: 3'- -ACCGCUa---CCGCcuCGCuUG-GUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 27602 | 0.66 | 0.55077 |
Target: 5'- aGGCGccugggucacccucgGUGGCGcuGGCG-GCgGCGGCGg -3' miRNA: 3'- aCCGC---------------UACCGCc-UCGCuUGgUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 18737 | 0.66 | 0.546703 |
Target: 5'- gGGCGAcGGCG--GCGAgGCCGCGcGUGa -3' miRNA: 3'- aCCGCUaCCGCcuCGCU-UGGUGC-CGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 11371 | 0.66 | 0.546703 |
Target: 5'- cUGGCGAccUGGCuGA-CGAAguCCACGaGCGg -3' miRNA: 3'- -ACCGCU--ACCGcCUcGCUU--GGUGC-CGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 3402 | 0.66 | 0.546703 |
Target: 5'- uUGGCcgcGGCGcccgcGCGAGCCACGcGCGc -3' miRNA: 3'- -ACCGcuaCCGCcu---CGCUUGGUGC-CGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 62175 | 0.66 | 0.545687 |
Target: 5'- cGGCGGgcacgGGCGGcaagaucGGCGAGauugaggaCAUGGUGg -3' miRNA: 3'- aCCGCUa----CCGCC-------UCGCUUg-------GUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 24887 | 0.66 | 0.536578 |
Target: 5'- aUGGCGAgGGCG--GCGAcCC-CGGCa -3' miRNA: 3'- -ACCGCUaCCGCcuCGCUuGGuGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 26886 | 0.66 | 0.535569 |
Target: 5'- cGGCGA-GGacauGGAGCGcauuGCCguugaguaucacaGCGGCGa -3' miRNA: 3'- aCCGCUaCCg---CCUCGCu---UGG-------------UGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 32207 | 0.67 | 0.516531 |
Target: 5'- cGGCaaccUGGUGGAGCaGGCCaucgcaGCGGCa -3' miRNA: 3'- aCCGcu--ACCGCCUCGcUUGG------UGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 22288 | 0.67 | 0.516531 |
Target: 5'- gGGCGcccugcccgucAUGGCGcaGGGUGAGCC-CGGUa -3' miRNA: 3'- aCCGC-----------UACCGC--CUCGCUUGGuGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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