Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 24887 | 0.66 | 0.536578 |
Target: 5'- aUGGCGAgGGCG--GCGAcCC-CGGCa -3' miRNA: 3'- -ACCGCUaCCGCcuCGCUuGGuGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 26886 | 0.66 | 0.535569 |
Target: 5'- cGGCGA-GGacauGGAGCGcauuGCCguugaguaucacaGCGGCGa -3' miRNA: 3'- aCCGCUaCCg---CCUCGCu---UGG-------------UGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 24764 | 0.66 | 0.535569 |
Target: 5'- uUGGCGAUcagcucgGGCGGGuugucGgGGuCCGCGGUGu -3' miRNA: 3'- -ACCGCUA-------CCGCCU-----CgCUuGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 30777 | 0.67 | 0.526519 |
Target: 5'- gGGCcguGAUGGaa-GGCGAgcuugACCGCGGCGu -3' miRNA: 3'- aCCG---CUACCgccUCGCU-----UGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 64348 | 0.67 | 0.526519 |
Target: 5'- cGGCGGUGuGCGGuucGGgGAuuucauGCCAgCGGCc -3' miRNA: 3'- aCCGCUAC-CGCC---UCgCU------UGGU-GCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 69012 | 0.67 | 0.522515 |
Target: 5'- cGGUGgcGGCGGccgugacgauggucAGCGccucgauggcgucGGCCGCGGCc -3' miRNA: 3'- aCCGCuaCCGCC--------------UCGC-------------UUGGUGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 22288 | 0.67 | 0.516531 |
Target: 5'- gGGCGcccugcccgucAUGGCGcaGGGUGAGCC-CGGUa -3' miRNA: 3'- aCCGC-----------UACCGC--CUCGCUUGGuGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 43819 | 0.67 | 0.516531 |
Target: 5'- cGuGCGAguucaccgagGGCGGcGGUGuACUGCGGCGg -3' miRNA: 3'- aC-CGCUa---------CCGCC-UCGCuUGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 32207 | 0.67 | 0.516531 |
Target: 5'- cGGCaaccUGGUGGAGCaGGCCaucgcaGCGGCa -3' miRNA: 3'- aCCGcu--ACCGCCUCGcUUGG------UGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 12194 | 0.67 | 0.516531 |
Target: 5'- -aGCGAgacGCGcGGGCGGACCuCGGCc -3' miRNA: 3'- acCGCUac-CGC-CUCGCUUGGuGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 26231 | 0.67 | 0.510575 |
Target: 5'- cGGCGAUgcccgcccccuacgcGGUGGGGCaugacGGACUccuCGGCGg -3' miRNA: 3'- aCCGCUA---------------CCGCCUCG-----CUUGGu--GCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 40590 | 0.67 | 0.510575 |
Target: 5'- gGGCacgauugcuacaucGUGGCGGcGUcGGCCGCGGCGu -3' miRNA: 3'- aCCGc-------------UACCGCCuCGcUUGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 30162 | 0.67 | 0.500713 |
Target: 5'- cGGCGcgGccGCGGAGUGGACCuacgccaagaacccuGaCGGCa -3' miRNA: 3'- aCCGCuaC--CGCCUCGCUUGG---------------U-GCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 2914 | 0.67 | 0.495814 |
Target: 5'- cUGGgGGccUGGCuGGGCGAcggcaccGCCACGcGCGc -3' miRNA: 3'- -ACCgCU--ACCGcCUCGCU-------UGGUGC-CGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 33426 | 0.67 | 0.487051 |
Target: 5'- gGGCGGgugcccUGGaCGGcgaacgucccGGCGuacACCGCGGCGc -3' miRNA: 3'- aCCGCU------ACC-GCC----------UCGCu--UGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 45369 | 0.67 | 0.4774 |
Target: 5'- cGGUcacgGGCGGGGCGuccggugcuGCCACGaGCa -3' miRNA: 3'- aCCGcua-CCGCCUCGCu--------UGGUGC-CGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 38204 | 0.67 | 0.4774 |
Target: 5'- aGGUuGUGGaUGGGGCGGccgaagacgucCCGCGGCGg -3' miRNA: 3'- aCCGcUACC-GCCUCGCUu----------GGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 52310 | 0.67 | 0.4774 |
Target: 5'- cGGgGAUGGCGGGGCcguUCuuGGCc -3' miRNA: 3'- aCCgCUACCGCCUCGcuuGGugCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 45034 | 0.67 | 0.474523 |
Target: 5'- -cGCGGUGGCGGcuccaccgcgugggGGCGAGCUcuuUGGCc -3' miRNA: 3'- acCGCUACCGCC--------------UCGCUUGGu--GCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 67268 | 0.68 | 0.466895 |
Target: 5'- gUGGCGAUGcGaCGGAcauccauGCGGACUGaGGCGu -3' miRNA: 3'- -ACCGCUAC-C-GCCU-------CGCUUGGUgCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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