Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18267 | 5' | -54.8 | NC_004681.1 | + | 69516 | 0.66 | 0.82646 |
|
Target: 5'- cCACGCCGUgug-CUcacUGcUGCGGCggCCGu -3' miRNA: 3'- -GUGCGGCAacuaGA---AC-ACGCCGa-GGU- -5' |
|||||||
| 18267 | 5' | -54.8 | NC_004681.1 | + | 17594 | 0.66 | 0.789059 |
|
Target: 5'- aGCGCCGUgguAUCg---GCGGCUCgGg -3' miRNA: 3'- gUGCGGCAac-UAGaacaCGCCGAGgU- -5' |
|||||||
| 18267 | 5' | -54.8 | NC_004681.1 | + | 53048 | 0.67 | 0.759302 |
|
Target: 5'- -cCGCCGa-GGUCcucGUGCGGCUCUu -3' miRNA: 3'- guGCGGCaaCUAGaa-CACGCCGAGGu -5' |
|||||||
| 18267 | 5' | -54.8 | NC_004681.1 | + | 43302 | 0.67 | 0.749115 |
|
Target: 5'- uCGCGCUGUUGuuuuGUCUgagcGUGUGGCauaaggCCAg -3' miRNA: 3'- -GUGCGGCAAC----UAGAa---CACGCCGa-----GGU- -5' |
|||||||
| 18267 | 5' | -54.8 | NC_004681.1 | + | 62165 | 0.69 | 0.605756 |
|
Target: 5'- cCAUGCCGcgcacagucaucgUGGUCUUGUGCGuGC-CCu -3' miRNA: 3'- -GUGCGGCa------------ACUAGAACACGC-CGaGGu -5' |
|||||||
| 18267 | 5' | -54.8 | NC_004681.1 | + | 19779 | 0.7 | 0.577674 |
|
Target: 5'- gACGCUGg------UGUGCGGCUCCGc -3' miRNA: 3'- gUGCGGCaacuagaACACGCCGAGGU- -5' |
|||||||
| 18267 | 5' | -54.8 | NC_004681.1 | + | 13595 | 1.08 | 0.001795 |
|
Target: 5'- cCACGCCGUUGAUCUUGUGCGGCUCCAc -3' miRNA: 3'- -GUGCGGCAACUAGAACACGCCGAGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home