miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18268 3' -55.2 NC_004681.1 + 5636 0.66 0.797216
Target:  5'- cCGGUG-UGGGCAcGCaGCUGGugagcuucgccGACGACg -3'
miRNA:   3'- -GCUACaACUCGUuCG-CGGCC-----------CUGCUG- -5'
18268 3' -55.2 NC_004681.1 + 49631 0.66 0.777934
Target:  5'- cCGGUGaacGAGaagGAGUGCCGGGAgCGGg -3'
miRNA:   3'- -GCUACaa-CUCg--UUCGCGGCCCU-GCUg -5'
18268 3' -55.2 NC_004681.1 + 28452 0.67 0.768071
Target:  5'- uCGAaGU---GCAucGGCGCCGGGGUGACg -3'
miRNA:   3'- -GCUaCAacuCGU--UCGCGGCCCUGCUG- -5'
18268 3' -55.2 NC_004681.1 + 43831 0.67 0.758072
Target:  5'- uGGUGgaaUGAGCGuGCGaguucaCCGaGGGCGGCg -3'
miRNA:   3'- gCUACa--ACUCGUuCGC------GGC-CCUGCUG- -5'
18268 3' -55.2 NC_004681.1 + 51769 0.67 0.747951
Target:  5'- --cUGUUGAGUucGgGCCauggggugGGGAUGACg -3'
miRNA:   3'- gcuACAACUCGuuCgCGG--------CCCUGCUG- -5'
18268 3' -55.2 NC_004681.1 + 8961 0.67 0.72738
Target:  5'- gGAUGccuucGAGCAGGCgGCCcuGGACGAa -3'
miRNA:   3'- gCUACaa---CUCGUUCG-CGGc-CCUGCUg -5'
18268 3' -55.2 NC_004681.1 + 66024 0.68 0.695867
Target:  5'- aCGAUGUUGAGCucaccGAGCGCCucuuCGAg -3'
miRNA:   3'- -GCUACAACUCG-----UUCGCGGcccuGCUg -5'
18268 3' -55.2 NC_004681.1 + 13629 0.68 0.695867
Target:  5'- gCGAUGgcgGAGCGAaccaCGgCGGGAgGGCa -3'
miRNA:   3'- -GCUACaa-CUCGUUc---GCgGCCCUgCUG- -5'
18268 3' -55.2 NC_004681.1 + 16138 0.68 0.67133
Target:  5'- gGAUGcggUGAcaGCGgcggcgcccuugccAGCaGCCGGGACGAUg -3'
miRNA:   3'- gCUACa--ACU--CGU--------------UCG-CGGCCCUGCUG- -5'
18268 3' -55.2 NC_004681.1 + 24527 0.68 0.66382
Target:  5'- aCGAUGUUGGGCGAGU----GGugGACc -3'
miRNA:   3'- -GCUACAACUCGUUCGcggcCCugCUG- -5'
18268 3' -55.2 NC_004681.1 + 46952 0.7 0.55656
Target:  5'- gGcgGUUGAuCAucggGGUGCCGGGGCGGu -3'
miRNA:   3'- gCuaCAACUcGU----UCGCGGCCCUGCUg -5'
18268 3' -55.2 NC_004681.1 + 51861 0.7 0.542873
Target:  5'- uGAUGUUcaGAccggcguuacucuuGCccGCGCCGGGGCGGCc -3'
miRNA:   3'- gCUACAA--CU--------------CGuuCGCGGCCCUGCUG- -5'
18268 3' -55.2 NC_004681.1 + 20022 0.71 0.525147
Target:  5'- -cGUGUUGAGCAGGC-CCGcGGugGcCu -3'
miRNA:   3'- gcUACAACUCGUUCGcGGC-CCugCuG- -5'
18268 3' -55.2 NC_004681.1 + 9199 0.72 0.45481
Target:  5'- aGAgcccGAGCcagcGGCGCCGGuGACGACg -3'
miRNA:   3'- gCUacaaCUCGu---UCGCGGCC-CUGCUG- -5'
18268 3' -55.2 NC_004681.1 + 13448 0.72 0.445174
Target:  5'- ---cGUUGAGCAucAGCGgaugCGGGAUGACg -3'
miRNA:   3'- gcuaCAACUCGU--UCGCg---GCCCUGCUG- -5'
18268 3' -55.2 NC_004681.1 + 63262 0.72 0.445174
Target:  5'- gGGUGUcGAGCGGGgGaaGGGGCGAg -3'
miRNA:   3'- gCUACAaCUCGUUCgCggCCCUGCUg -5'
18268 3' -55.2 NC_004681.1 + 33434 0.77 0.234343
Target:  5'- uGAUGUgcGGGCGGGUGCCcuGGACGGCg -3'
miRNA:   3'- gCUACAa-CUCGUUCGCGGc-CCUGCUG- -5'
18268 3' -55.2 NC_004681.1 + 19634 0.79 0.185446
Target:  5'- gCGAgggUGGGCAAGC-CUGGGACGGCa -3'
miRNA:   3'- -GCUacaACUCGUUCGcGGCCCUGCUG- -5'
18268 3' -55.2 NC_004681.1 + 13901 1.11 0.001112
Target:  5'- aCGAUGUUGAGCAAGCGCCGGGACGACa -3'
miRNA:   3'- -GCUACAACUCGUUCGCGGCCCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.