miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18268 5' -54.5 NC_004681.1 + 25148 0.66 0.802373
Target:  5'- cGCGCCGcCCUcugcggucaccguguUGuCGCcaagGGUGAAGa- -3'
miRNA:   3'- -CGCGGCaGGA---------------AC-GCGaa--CCACUUCaa -5'
18268 5' -54.5 NC_004681.1 + 49558 0.66 0.798541
Target:  5'- uUGCCGUCCUUGUaGCggGGgccgugGAAGc- -3'
miRNA:   3'- cGCGGCAGGAACG-CGaaCCa-----CUUCaa -5'
18268 5' -54.5 NC_004681.1 + 14496 0.66 0.778976
Target:  5'- cGCGCUGguggCCggugcugGCGCgagcaaGGUGAAGUc -3'
miRNA:   3'- -CGCGGCa---GGaa-----CGCGaa----CCACUUCAa -5'
18268 5' -54.5 NC_004681.1 + 47675 0.67 0.758808
Target:  5'- uUGCCGUCaugaugucgUGCaGCUUGGUGAAc-- -3'
miRNA:   3'- cGCGGCAGga-------ACG-CGAACCACUUcaa -5'
18268 5' -54.5 NC_004681.1 + 65118 0.67 0.758808
Target:  5'- aCGgCGUCCUUGgGgUUGGUGucuuuGAGUUc -3'
miRNA:   3'- cGCgGCAGGAACgCgAACCAC-----UUCAA- -5'
18268 5' -54.5 NC_004681.1 + 32509 0.69 0.652061
Target:  5'- gGCGaCGUCCUgaucGCGCUgGGUG-AGUUc -3'
miRNA:   3'- -CGCgGCAGGAa---CGCGAaCCACuUCAA- -5'
18268 5' -54.5 NC_004681.1 + 49427 0.7 0.597317
Target:  5'- gGCGCCG-CCgugGCGgacGGUGAGGUUg -3'
miRNA:   3'- -CGCGGCaGGaa-CGCgaaCCACUUCAA- -5'
18268 5' -54.5 NC_004681.1 + 49827 0.71 0.522108
Target:  5'- uUGCCGcCCUggcUGCGCUucuugcggUGGUGGAGg- -3'
miRNA:   3'- cGCGGCaGGA---ACGCGA--------ACCACUUCaa -5'
18268 5' -54.5 NC_004681.1 + 33685 0.73 0.431469
Target:  5'- cGCGCuUGUCCUUGCGCUUcgccgcggGaGUGAAGc- -3'
miRNA:   3'- -CGCG-GCAGGAACGCGAA--------C-CACUUCaa -5'
18268 5' -54.5 NC_004681.1 + 13866 1.08 0.001849
Target:  5'- gGCGCCGUCCUUGCGCUUGGUGAAGUUg -3'
miRNA:   3'- -CGCGGCAGGAACGCGAACCACUUCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.