miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18269 3' -55.4 NC_004681.1 + 37653 0.66 0.806615
Target:  5'- cCGACUUCUgcgggGCCuCGCCagcgGCCGc-- -3'
miRNA:   3'- -GCUGAAGGaa---CGG-GCGGaa--CGGCuuc -5'
18269 3' -55.4 NC_004681.1 + 47284 0.66 0.795317
Target:  5'- uGGCgaaCUUGCCCGCCaccaccuuggcGUCGAGGu -3'
miRNA:   3'- gCUGaagGAACGGGCGGaa---------CGGCUUC- -5'
18269 3' -55.4 NC_004681.1 + 49689 0.66 0.784753
Target:  5'- gCGcCUUCUUgGCCCGCCUgaugcagucguuggUGCCucGGg -3'
miRNA:   3'- -GCuGAAGGAaCGGGCGGA--------------ACGGcuUC- -5'
18269 3' -55.4 NC_004681.1 + 54026 0.66 0.76807
Target:  5'- uGGCUUCCacgaggGUCCGCCgcgcGCCcGAGa -3'
miRNA:   3'- gCUGAAGGaa----CGGGCGGaa--CGGcUUC- -5'
18269 3' -55.4 NC_004681.1 + 32149 0.67 0.747951
Target:  5'- aCGcCUUCCUUGCgCUGC-UUGCCcAGGa -3'
miRNA:   3'- -GCuGAAGGAACG-GGCGgAACGGcUUC- -5'
18269 3' -55.4 NC_004681.1 + 51850 0.67 0.747951
Target:  5'- cCGGCguuacUCUUGCCCGC---GCCGggGc -3'
miRNA:   3'- -GCUGaa---GGAACGGGCGgaaCGGCuuC- -5'
18269 3' -55.4 NC_004681.1 + 63853 0.67 0.737716
Target:  5'- gGGCgggCCUUGCCucgCGCCgugGUCGAAu -3'
miRNA:   3'- gCUGaa-GGAACGG---GCGGaa-CGGCUUc -5'
18269 3' -55.4 NC_004681.1 + 14876 0.68 0.695867
Target:  5'- uCGACUUCCacaucCCCGCCUcgcaggucGCCGAc- -3'
miRNA:   3'- -GCUGAAGGaac--GGGCGGAa-------CGGCUuc -5'
18269 3' -55.4 NC_004681.1 + 1659 0.68 0.68523
Target:  5'- cCGuCUUCCUcuccCCCGCCgcccaGCUGAAGg -3'
miRNA:   3'- -GCuGAAGGAac--GGGCGGaa---CGGCUUC- -5'
18269 3' -55.4 NC_004681.1 + 39982 0.68 0.653067
Target:  5'- gGGggUCUccGCCCGCCUgGUCGAGGa -3'
miRNA:   3'- gCUgaAGGaaCGGGCGGAaCGGCUUC- -5'
18269 3' -55.4 NC_004681.1 + 56529 0.69 0.625048
Target:  5'- aCGAUgaCCUcgcgGCCCGCCUccaacaggugugcgcUGCgGAAGa -3'
miRNA:   3'- -GCUGaaGGAa---CGGGCGGA---------------ACGgCUUC- -5'
18269 3' -55.4 NC_004681.1 + 29957 0.7 0.535549
Target:  5'- aGAUUggaacCCUUGCCCGCCagGUCGGc- -3'
miRNA:   3'- gCUGAa----GGAACGGGCGGaaCGGCUuc -5'
18269 3' -55.4 NC_004681.1 + 6449 0.71 0.49443
Target:  5'- gGACcagUCUccGCCCGCCUcggUGCCGGGa -3'
miRNA:   3'- gCUGa--AGGaaCGGGCGGA---ACGGCUUc -5'
18269 3' -55.4 NC_004681.1 + 1376 0.72 0.464558
Target:  5'- aGACUUCCUgggcGCCCuCCgacaUGUCGggGg -3'
miRNA:   3'- gCUGAAGGAa---CGGGcGGa---ACGGCuuC- -5'
18269 3' -55.4 NC_004681.1 + 5183 0.72 0.45481
Target:  5'- aGACccugUCCgcGCCCGCCaugGCCGAGc -3'
miRNA:   3'- gCUGa---AGGaaCGGGCGGaa-CGGCUUc -5'
18269 3' -55.4 NC_004681.1 + 8221 0.72 0.435654
Target:  5'- cCGACUUCaagGCCCaCCagGCCGAGGu -3'
miRNA:   3'- -GCUGAAGgaaCGGGcGGaaCGGCUUC- -5'
18269 3' -55.4 NC_004681.1 + 14270 1.09 0.001326
Target:  5'- cCGACUUCCUUGCCCGCCUUGCCGAAGa -3'
miRNA:   3'- -GCUGAAGGAACGGGCGGAACGGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.