Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18269 | 5' | -56.3 | NC_004681.1 | + | 74399 | 0.66 | 0.727124 |
Target: 5'- cGCUUcgaUCUGCacucGGAagucaccuuccGGGGCGGuccagccACGUCGCu -3' miRNA: 3'- -UGGA---AGACG----UCU-----------UCCCGCC-------UGCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 62952 | 0.68 | 0.633142 |
Target: 5'- uCCUUCgGCGGuGGuGGCGGcgGCGgCGCg -3' miRNA: 3'- uGGAAGaCGUCuUC-CCGCC--UGCaGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 62528 | 0.67 | 0.665166 |
Target: 5'- uCCUgggCgGCGGAgAGGGCGG-UGUCGg -3' miRNA: 3'- uGGAa--GaCGUCU-UCCCGCCuGCAGCg -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 62109 | 0.69 | 0.558782 |
Target: 5'- uCCUgCUGCAGuc-GGUGGACGagCGCa -3' miRNA: 3'- uGGAaGACGUCuucCCGCCUGCa-GCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 57905 | 0.66 | 0.768473 |
Target: 5'- uCCUUCgccaccucgGCGGcgcGGCGcGugGUCGCg -3' miRNA: 3'- uGGAAGa--------CGUCuucCCGC-CugCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 57609 | 0.68 | 0.622453 |
Target: 5'- gAUUUUCUGUuccguGAGGGcGCGGACGcucucacgcUCGCc -3' miRNA: 3'- -UGGAAGACGu----CUUCC-CGCCUGC---------AGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 56136 | 0.66 | 0.768473 |
Target: 5'- aGCUgcgUCUccacGguGAAGGcgauGCGGAgGUCGCc -3' miRNA: 3'- -UGGa--AGA----CguCUUCC----CGCCUgCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 54545 | 0.68 | 0.600043 |
Target: 5'- cACCgucguagCUGCGGAGGaugucucGGUcgacgcagcucuGGACGUCGCg -3' miRNA: 3'- -UGGaa-----GACGUCUUC-------CCG------------CCUGCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 52381 | 0.72 | 0.384284 |
Target: 5'- gGCCUUCUGgAGGAGGa-GGacaacguccGCGUCGCg -3' miRNA: 3'- -UGGAAGACgUCUUCCcgCC---------UGCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 50567 | 0.7 | 0.487073 |
Target: 5'- ------cGCAGGacacggucGGGGUGGGCGUCGCc -3' miRNA: 3'- uggaagaCGUCU--------UCCCGCCUGCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 50295 | 0.66 | 0.767488 |
Target: 5'- cACCUUggggugcUUGUGGAAGuugcGGCuaaccuGGACGUCGCu -3' miRNA: 3'- -UGGAA-------GACGUCUUC----CCG------CCUGCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 49962 | 0.74 | 0.319125 |
Target: 5'- gGCgUUUCUGCGGGguucugccaGGGGCGGACGUgaaaGCc -3' miRNA: 3'- -UG-GAAGACGUCU---------UCCCGCCUGCAg---CG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 48664 | 0.67 | 0.696926 |
Target: 5'- gGCCcacgaUGCAGcAGGGCuGGGugcugcCGUCGCg -3' miRNA: 3'- -UGGaag--ACGUCuUCCCG-CCU------GCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 40743 | 0.72 | 0.41089 |
Target: 5'- cGCCUUaCgugGCGGAguagcugggagAGGGCGGccaccaucaACGUCGCc -3' miRNA: 3'- -UGGAA-Ga--CGUCU-----------UCCCGCC---------UGCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 37656 | 0.66 | 0.748536 |
Target: 5'- -aCUUCUGCGGGgccucgccAGcGGcCGcGCGUCGCu -3' miRNA: 3'- ugGAAGACGUCU--------UC-CC-GCcUGCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 36887 | 0.67 | 0.707408 |
Target: 5'- uGCCUagUCaGCGG-GGGGCGGGCca-GCg -3' miRNA: 3'- -UGGA--AGaCGUCuUCCCGCCUGcagCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 35826 | 0.66 | 0.748536 |
Target: 5'- uCCgUCUGagaguucgaacCGGAuGGGUGGGCgGUCGCu -3' miRNA: 3'- uGGaAGAC-----------GUCUuCCCGCCUG-CAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 34469 | 0.69 | 0.548321 |
Target: 5'- gACCUgccgugGCAcGAAGcaGCGGugGUCGCa -3' miRNA: 3'- -UGGAaga---CGU-CUUCc-CGCCugCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 27798 | 0.71 | 0.438611 |
Target: 5'- -aCUUCUGgAGAuGGGCGcGGCGgCGCc -3' miRNA: 3'- ugGAAGACgUCUuCCCGC-CUGCaGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 26331 | 0.66 | 0.758565 |
Target: 5'- cACCgc--GUAG-GGGGCGGGCaUCGCc -3' miRNA: 3'- -UGGaagaCGUCuUCCCGCCUGcAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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