Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18269 | 5' | -56.3 | NC_004681.1 | + | 34469 | 0.69 | 0.548321 |
Target: 5'- gACCUgccgugGCAcGAAGcaGCGGugGUCGCa -3' miRNA: 3'- -UGGAaga---CGU-CUUCc-CGCCugCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 62109 | 0.69 | 0.558782 |
Target: 5'- uCCUgCUGCAGuc-GGUGGACGagCGCa -3' miRNA: 3'- uGGAaGACGUCuucCCGCCUGCa-GCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 18432 | 0.69 | 0.569299 |
Target: 5'- gGCaucgCUGUccAGAAGGGCauGGAgGUCGCc -3' miRNA: 3'- -UGgaa-GACG--UCUUCCCG--CCUgCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 62952 | 0.68 | 0.633142 |
Target: 5'- uCCUUCgGCGGuGGuGGCGGcgGCGgCGCg -3' miRNA: 3'- uGGAAGaCGUCuUC-CCGCC--UGCaGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 74399 | 0.66 | 0.727124 |
Target: 5'- cGCUUcgaUCUGCacucGGAagucaccuuccGGGGCGGuccagccACGUCGCu -3' miRNA: 3'- -UGGA---AGACG----UCU-----------UCCCGCC-------UGCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 35826 | 0.66 | 0.748536 |
Target: 5'- uCCgUCUGagaguucgaacCGGAuGGGUGGGCgGUCGCu -3' miRNA: 3'- uGGaAGAC-----------GUCUuCCCGCCUG-CAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 37656 | 0.66 | 0.748536 |
Target: 5'- -aCUUCUGCGGGgccucgccAGcGGcCGcGCGUCGCu -3' miRNA: 3'- ugGAAGACGUCU--------UC-CC-GCcUGCAGCG- -5' |
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18269 | 5' | -56.3 | NC_004681.1 | + | 14144 | 0.74 | 0.319125 |
Target: 5'- cCCUUCUGCAGAAGGuGCaGGGCaucuUCGg -3' miRNA: 3'- uGGAAGACGUCUUCC-CG-CCUGc---AGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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