Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18270 | 3' | -54.9 | NC_004681.1 | + | 75423 | 0.68 | 0.698249 |
Target: 5'- uGGCGUGCGcagaggccacgucuGGUGGCuuucgcuccGCaCUUGGUGCa -3' miRNA: 3'- gCCGUAUGC--------------CCACCGc--------UG-GAACUACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 64766 | 0.67 | 0.78288 |
Target: 5'- aGGCccagcuugGCGGGaucguccgguaUGGCGAUCUgGGUGUa -3' miRNA: 3'- gCCGua------UGCCC-----------ACCGCUGGAaCUACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 62367 | 0.69 | 0.649132 |
Target: 5'- uCGGCGgugaucuugcccccgGCGcGGUGGacgaaGACCUUGGcgaUGCg -3' miRNA: 3'- -GCCGUa--------------UGC-CCACCg----CUGGAACU---ACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 58747 | 0.7 | 0.573002 |
Target: 5'- gCGGCGcagGCGGccGUGGCGcaggacACCUUGAgggGCc -3' miRNA: 3'- -GCCGUa--UGCC--CACCGC------UGGAACUa--CG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 50097 | 0.67 | 0.78288 |
Target: 5'- aCGGCGcGCGGGaUGGUGGUCUccagggUGAUGa -3' miRNA: 3'- -GCCGUaUGCCC-ACCGCUGGA------ACUACg -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 48611 | 0.7 | 0.579385 |
Target: 5'- uGGCAgugcgccacccgcucCGGGUucuccgcGGCGAguuCCUUGAUGCg -3' miRNA: 3'- gCCGUau-------------GCCCA-------CCGCU---GGAACUACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 44820 | 0.69 | 0.669513 |
Target: 5'- aGGCGccGCagguGGUGGUGACgcgCUUGGUGCg -3' miRNA: 3'- gCCGUa-UGc---CCACCGCUG---GAACUACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 42962 | 0.69 | 0.658797 |
Target: 5'- aGGCAcgcgcUGCaGGUGuaGACCUUGgcGCc -3' miRNA: 3'- gCCGU-----AUGcCCACcgCUGGAACuaCG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 42450 | 0.68 | 0.732743 |
Target: 5'- gCGGCAcuUGCGGcUGGUGGCaUUGGaGCg -3' miRNA: 3'- -GCCGU--AUGCCcACCGCUGgAACUaCG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 42419 | 0.67 | 0.77311 |
Target: 5'- uGcGCGUggGCGGGgaUGGUGAgCUUGAcgaUGCu -3' miRNA: 3'- gC-CGUA--UGCCC--ACCGCUgGAACU---ACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 34536 | 0.67 | 0.753162 |
Target: 5'- gCGGCAccgucaucUGGGauggcaucaUGGCGACCUgcgccaagGGUGCa -3' miRNA: 3'- -GCCGUau------GCCC---------ACCGCUGGAa-------CUACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 28948 | 0.66 | 0.801962 |
Target: 5'- aCGGCAUACGGaGuUGGUGACaca---GCa -3' miRNA: 3'- -GCCGUAUGCC-C-ACCGCUGgaacuaCG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 27763 | 0.66 | 0.811254 |
Target: 5'- gCGGCAgcgGCGGcagcGGCGGCgCUaaGGUGCu -3' miRNA: 3'- -GCCGUa--UGCCca--CCGCUG-GAa-CUACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 25006 | 0.68 | 0.711938 |
Target: 5'- uCGGCGgcaaGGGUGGCGAcacggucuucacCCUUG--GCg -3' miRNA: 3'- -GCCGUaug-CCCACCGCU------------GGAACuaCG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 24845 | 0.7 | 0.573002 |
Target: 5'- uCGGCGgcGCGGGcGGCGGCCgccaagGCu -3' miRNA: 3'- -GCCGUa-UGCCCaCCGCUGGaacua-CG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 19186 | 0.68 | 0.711938 |
Target: 5'- gGGUGUccUGGGUGGUGACgCcgGAUGCc -3' miRNA: 3'- gCCGUAu-GCCCACCGCUG-GaaCUACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 18549 | 0.66 | 0.801962 |
Target: 5'- uGGCc--CGGuUGGCGACCUccAUGCc -3' miRNA: 3'- gCCGuauGCCcACCGCUGGAacUACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 18236 | 0.67 | 0.753162 |
Target: 5'- gGGCGUG-GGGaacgGGcCGACCUgacccGGUGCc -3' miRNA: 3'- gCCGUAUgCCCa---CC-GCUGGAa----CUACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 17411 | 0.66 | 0.811254 |
Target: 5'- aCGGCcgccccACGGGUGGCG-CCaacAUGUg -3' miRNA: 3'- -GCCGua----UGCCCACCGCuGGaacUACG- -5' |
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18270 | 3' | -54.9 | NC_004681.1 | + | 16355 | 0.68 | 0.701418 |
Target: 5'- gCGGCGgu-GGGUGGCGACgagGgcGCc -3' miRNA: 3'- -GCCGUaugCCCACCGCUGgaaCuaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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