Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18270 | 3' | -54.9 | NC_004681.1 | + | 14734 | 1.12 | 0.000991 |
|
Target: 5'- uCGGCAUACGGGUGGCGACCUUGAUGCg -3' miRNA: 3'- -GCCGUAUGCCCACCGCUGGAACUACG- -5' |
|||||||
| 18270 | 3' | -54.9 | NC_004681.1 | + | 14462 | 0.73 | 0.404062 |
|
Target: 5'- gCGGCGaucaUGCGGGcggaGGUGGCCUcGAUGUu -3' miRNA: 3'- -GCCGU----AUGCCCa---CCGCUGGAaCUACG- -5' |
|||||||
| 18270 | 3' | -54.9 | NC_004681.1 | + | 7255 | 0.68 | 0.722383 |
|
Target: 5'- gGGC--GCGGGUGucgaGCG-CCUUGGacUGCa -3' miRNA: 3'- gCCGuaUGCCCAC----CGCuGGAACU--ACG- -5' |
|||||||
| 18270 | 3' | -54.9 | NC_004681.1 | + | 6843 | 0.67 | 0.753162 |
|
Target: 5'- uCGGCcgACuggucgauGGUGGCuagGGCCUUGGUGa -3' miRNA: 3'- -GCCGuaUGc-------CCACCG---CUGGAACUACg -5' |
|||||||
| 18270 | 3' | -54.9 | NC_004681.1 | + | 2434 | 0.67 | 0.78288 |
|
Target: 5'- uGGCGcGCGGcacgcagaaGUGGgcgcCGACCUcGGUGCa -3' miRNA: 3'- gCCGUaUGCC---------CACC----GCUGGAaCUACG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home