Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 26964 | 0.66 | 0.538904 |
Target: 5'- gCCGCcauagguGGCGg--UGGGGACCGGCCc- -3' miRNA: 3'- aGGCG-------CCGCaguGCCUUUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 14767 | 0.66 | 0.539921 |
Target: 5'- uUCCGUGaCGcCGCGGAcGCCcuGGCCa- -3' miRNA: 3'- -AGGCGCcGCaGUGCCUuUGG--CCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 66850 | 0.66 | 0.539921 |
Target: 5'- --gGCGGCGUUGCc---ACCGGCCUUc -3' miRNA: 3'- aggCGCCGCAGUGccuuUGGCCGGAA- -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 33402 | 0.66 | 0.560398 |
Target: 5'- gUCC-CGGCGUacacCGCGGcgcGACCGGCg-- -3' miRNA: 3'- -AGGcGCCGCA----GUGCCu--UUGGCCGgaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 49432 | 0.66 | 0.56452 |
Target: 5'- cCCGCGGCGcCgccgugGCGGAcggugagguugugcaGACCGcccGCCUUg -3' miRNA: 3'- aGGCGCCGCaG------UGCCU---------------UUGGC---CGGAA- -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 25823 | 0.66 | 0.569684 |
Target: 5'- aCCGCGGUGcUCAUGGcaauccaGGACgGGCUc- -3' miRNA: 3'- aGGCGCCGC-AGUGCC-------UUUGgCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 65075 | 0.66 | 0.570718 |
Target: 5'- cCCGCucgGGUgGUCGCcGAggUCGGCCUg -3' miRNA: 3'- aGGCG---CCG-CAGUGcCUuuGGCCGGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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