miRNA display CGI

Results 41 - 47 of 47 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
18271	3'	-59.8	NC_004681.1	+	17666	0.71	0.312257
	Target:  5'- gCCGCGGCGUCACugccccaguugaaggGGguGCCgccagggagcguGGCCUg -3' miRNA:   3'- aGGCGCCGCAGUG---------------CCuuUGG------------CCGGAa -5'
18271	3'	-59.8	NC_004681.1	+	39264	0.7	0.316682
	Target:  5'- cUCCGCGGCc---CGGAuGCCGGUCUc -3' miRNA:   3'- -AGGCGCCGcaguGCCUuUGGCCGGAa -5'
18271	3'	-59.8	NC_004681.1	+	40560	0.7	0.347385
	Target:  5'- gCCGCGGCGuUCAauGucAUCGGCCg- -3' miRNA:   3'- aGGCGCCGC-AGUgcCuuUGGCCGGaa -5'
18271	3'	-59.8	NC_004681.1	+	13090	0.7	0.347385
	Target:  5'- gUCCGCGGUGcCAgCGGuguAGCCGGUg-- -3' miRNA:   3'- -AGGCGCCGCaGU-GCCu--UUGGCCGgaa -5'
18271	3'	-59.8	NC_004681.1	+	39216	0.7	0.347385
	Target:  5'- gUCGCGGCgGUCGCGGAAgguguuGCCcgcgcagguGGCCa- -3' miRNA:   3'- aGGCGCCG-CAGUGCCUU------UGG---------CCGGaa -5'
18271	3'	-59.8	NC_004681.1	+	42296	0.69	0.371772
	Target:  5'- aUCCGCuccaguucGGCGUgACGGAGGuuGGCa-- -3' miRNA:   3'- -AGGCG--------CCGCAgUGCCUUUggCCGgaa -5'
18271	3'	-59.8	NC_004681.1	+	14859	1.05	0.001075
	Target:  5'- gUCCGCGGCGUCACGGAAACCGGCCUUc -3' miRNA:   3'- -AGGCGCCGCAGUGCCUUUGGCCGGAA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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