miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18271 3' -59.8 NC_004681.1 + 3107 0.68 0.42212
Target:  5'- gCCGCuGGCGUagucguaggagaGCGGguACCGGCUg- -3'
miRNA:   3'- aGGCG-CCGCAg-----------UGCCuuUGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 7318 0.68 0.414934
Target:  5'- -gCGCGGUGUCGCcGuuACCGGCa-- -3'
miRNA:   3'- agGCGCCGCAGUGcCuuUGGCCGgaa -5'
18271 3' -59.8 NC_004681.1 + 63192 0.68 0.414934
Target:  5'- gUCCGCGGCGgagauCGGGAAgagguUCGGCUUc -3'
miRNA:   3'- -AGGCGCCGCagu--GCCUUU-----GGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 54961 0.68 0.414934
Target:  5'- gCCGCGGuCGUCcuugGCGucAGCCGGUCg- -3'
miRNA:   3'- aGGCGCC-GCAG----UGCcuUUGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 19017 0.68 0.414934
Target:  5'- cCCGCGaCGggagCcUGGGGACCGGCCa- -3'
miRNA:   3'- aGGCGCcGCa---GuGCCUUUGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 46727 0.69 0.406057
Target:  5'- uUCCGCGGCaucgacgcuGUCAUGaacgugguGGGACCGGCgCUg -3'
miRNA:   3'- -AGGCGCCG---------CAGUGC--------CUUUGGCCG-GAa -5'
18271 3' -59.8 NC_004681.1 + 31225 0.69 0.406057
Target:  5'- aUCGCaGCGUggCugGGGGACCGGCg-- -3'
miRNA:   3'- aGGCGcCGCA--GugCCUUUGGCCGgaa -5'
18271 3' -59.8 NC_004681.1 + 12397 0.69 0.388667
Target:  5'- aCCGCGGCGacgcUCGuCGGuGAGCCGGUg-- -3'
miRNA:   3'- aGGCGCCGC----AGU-GCC-UUUGGCCGgaa -5'
18271 3' -59.8 NC_004681.1 + 42296 0.69 0.371772
Target:  5'- aUCCGCuccaguucGGCGUgACGGAGGuuGGCa-- -3'
miRNA:   3'- -AGGCG--------CCGCAgUGCCUUUggCCGgaa -5'
18271 3' -59.8 NC_004681.1 + 5782 0.69 0.363515
Target:  5'- aCCGCGGCGaugUGGAAgaacGCUGGCCg- -3'
miRNA:   3'- aGGCGCCGCaguGCCUU----UGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 13090 0.7 0.347385
Target:  5'- gUCCGCGGUGcCAgCGGuguAGCCGGUg-- -3'
miRNA:   3'- -AGGCGCCGCaGU-GCCu--UUGGCCGgaa -5'
18271 3' -59.8 NC_004681.1 + 39216 0.7 0.347385
Target:  5'- gUCGCGGCgGUCGCGGAAgguguuGCCcgcgcagguGGCCa- -3'
miRNA:   3'- aGGCGCCG-CAGUGCCUU------UGG---------CCGGaa -5'
18271 3' -59.8 NC_004681.1 + 40560 0.7 0.347385
Target:  5'- gCCGCGGCGuUCAauGucAUCGGCCg- -3'
miRNA:   3'- aGGCGCCGC-AGUgcCuuUGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 39264 0.7 0.316682
Target:  5'- cUCCGCGGCc---CGGAuGCCGGUCUc -3'
miRNA:   3'- -AGGCGCCGcaguGCCUuUGGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 16313 0.7 0.316682
Target:  5'- cCCGCGGCcggaUCgACGGAAGCCgagcaGGCCa- -3'
miRNA:   3'- aGGCGCCGc---AG-UGCCUUUGG-----CCGGaa -5'
18271 3' -59.8 NC_004681.1 + 17666 0.71 0.312257
Target:  5'- gCCGCGGCGUCACugccccaguugaaggGGguGCCgccagggagcguGGCCUg -3'
miRNA:   3'- aGGCGCCGCAGUG---------------CCuuUGG------------CCGGAa -5'
18271 3' -59.8 NC_004681.1 + 14466 0.71 0.309333
Target:  5'- cUCCGCGGCGaUCAUGcgggcGGAGgUGGCCUc -3'
miRNA:   3'- -AGGCGCCGC-AGUGC-----CUUUgGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 20112 0.71 0.297847
Target:  5'- cUCCGCGGU-UCGacagcgccaagugccCGGAcuGACCGGCCUg -3'
miRNA:   3'- -AGGCGCCGcAGU---------------GCCU--UUGGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 39960 0.71 0.28807
Target:  5'- aUCCGCGcGCGUCGgcgcCGGGucaacucaccGGCuCGGCCUUg -3'
miRNA:   3'- -AGGCGC-CGCAGU----GCCU----------UUG-GCCGGAA- -5'
18271 3' -59.8 NC_004681.1 + 30753 0.71 0.281242
Target:  5'- aCCGCGGCGUcCGCGGGAAUCucGCUc- -3'
miRNA:   3'- aGGCGCCGCA-GUGCCUUUGGc-CGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.