miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18271 5' -53.8 NC_004681.1 + 39321 0.66 0.876429
Target:  5'- -cGCGcGGCgccgCgCUGgacaCGGCUCCGAGGg -3'
miRNA:   3'- caUGCuCCGaa--G-GAC----GUUGAGGCUCC- -5'
18271 5' -53.8 NC_004681.1 + 8494 0.66 0.852455
Target:  5'- -gACGuGGCgUUCUUG-AGCUCCGGGu -3'
miRNA:   3'- caUGCuCCG-AAGGACgUUGAGGCUCc -5'
18271 5' -53.8 NC_004681.1 + 14997 0.67 0.808119
Target:  5'- cUGCGAGGCgacgUCgGCGAcCUgCGAGGc -3'
miRNA:   3'- cAUGCUCCGaa--GGaCGUU-GAgGCUCC- -5'
18271 5' -53.8 NC_004681.1 + 47728 0.68 0.789059
Target:  5'- cGUA-GAGGCUUCC-GCAACUgcaUCGcAGGu -3'
miRNA:   3'- -CAUgCUCCGAAGGaCGUUGA---GGC-UCC- -5'
18271 5' -53.8 NC_004681.1 + 59958 0.68 0.769363
Target:  5'- -gGCGAGGaugUCCcgGCAGuCgCCGAGGu -3'
miRNA:   3'- caUGCUCCga-AGGa-CGUU-GaGGCUCC- -5'
18271 5' -53.8 NC_004681.1 + 8285 0.68 0.749115
Target:  5'- -gGCGAgGGCUUCCUuCuuCUCCGcGGc -3'
miRNA:   3'- caUGCU-CCGAAGGAcGuuGAGGCuCC- -5'
18271 5' -53.8 NC_004681.1 + 62339 0.69 0.717902
Target:  5'- -gACGAGGC--CCUGCGuuacgGCUUCGuGGa -3'
miRNA:   3'- caUGCUCCGaaGGACGU-----UGAGGCuCC- -5'
18271 5' -53.8 NC_004681.1 + 37596 0.69 0.717902
Target:  5'- cGUACGAGGCguaCCUGaaGAC-CCGGGa -3'
miRNA:   3'- -CAUGCUCCGaa-GGACg-UUGaGGCUCc -5'
18271 5' -53.8 NC_004681.1 + 46919 0.69 0.696661
Target:  5'- -cGCGGGGCUgcgUCUcGUAgcGCUCCGAGu -3'
miRNA:   3'- caUGCUCCGAa--GGA-CGU--UGAGGCUCc -5'
18271 5' -53.8 NC_004681.1 + 64405 0.7 0.679489
Target:  5'- uGUACGAGGCaUUCgccaaggaugacgaGCuccuCUCCGAGGg -3'
miRNA:   3'- -CAUGCUCCGaAGGa-------------CGuu--GAGGCUCC- -5'
18271 5' -53.8 NC_004681.1 + 25204 0.7 0.675177
Target:  5'- -aGCGGGGUgggUCC-GCGGCcaaCCGAGGu -3'
miRNA:   3'- caUGCUCCGa--AGGaCGUUGa--GGCUCC- -5'
18271 5' -53.8 NC_004681.1 + 30172 0.72 0.524613
Target:  5'- uGUGC--GGCUgagCCUGCGcgacagcgggaGCUCCGAGGc -3'
miRNA:   3'- -CAUGcuCCGAa--GGACGU-----------UGAGGCUCC- -5'
18271 5' -53.8 NC_004681.1 + 14824 1.1 0.001961
Target:  5'- uGUACGAGGCUUCCUGCAACUCCGAGGc -3'
miRNA:   3'- -CAUGCUCCGAAGGACGUUGAGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.