miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18272 3' -64.8 NC_004681.1 + 22910 0.67 0.310677
Target:  5'- uUCCugGUGGCCGuUCAGGUggaaCCCGu- -3'
miRNA:   3'- -GGGugCGCCGGC-GGUCCGag--GGGUgu -5'
18272 3' -64.8 NC_004681.1 + 24856 0.77 0.063878
Target:  5'- --gGCgGCGGCCGCCaAGGCUCCCuCACc -3'
miRNA:   3'- gggUG-CGCCGGCGG-UCCGAGGG-GUGu -5'
18272 3' -64.8 NC_004681.1 + 24948 0.68 0.264357
Target:  5'- gCCUugGCGGCCGCCGcccGCgCCgCCGa- -3'
miRNA:   3'- -GGGugCGCCGGCGGUc--CGaGG-GGUgu -5'
18272 3' -64.8 NC_004681.1 + 25085 0.68 0.264357
Target:  5'- gCCgACGCcuguGCCGCCAGaGC-CCCCGu- -3'
miRNA:   3'- -GGgUGCGc---CGGCGGUC-CGaGGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 26539 0.67 0.290104
Target:  5'- aCUCugGCGGCgCGaagGGGCUUCCCGa- -3'
miRNA:   3'- -GGGugCGCCG-GCgg-UCCGAGGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 27030 0.67 0.297521
Target:  5'- gCCUACGCGGUCGCCuucgaguccguggucGGCgucgagggaCCUACAa -3'
miRNA:   3'- -GGGUGCGCCGGCGGu--------------CCGag-------GGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 28404 0.66 0.347389
Target:  5'- gCCugGCGGUCaCCccGGCU-CCCGCGg -3'
miRNA:   3'- gGGugCGCCGGcGGu-CCGAgGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 28524 0.67 0.312794
Target:  5'- cCCCAcgcgagcuccaucucCGCGGgagccggggugaCCGCCAGGCcauugacugggguUCCCCAg- -3'
miRNA:   3'- -GGGU---------------GCGCC------------GGCGGUCCG-------------AGGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 30068 0.67 0.290104
Target:  5'- cUCC-CGCuGUCGCgCAGGCUCagCCGCAc -3'
miRNA:   3'- -GGGuGCGcCGGCG-GUCCGAGg-GGUGU- -5'
18272 3' -64.8 NC_004681.1 + 31902 0.7 0.198167
Target:  5'- cCUCGCgGCGGCCGCCaucgcGGGCcucaUCCCgACc -3'
miRNA:   3'- -GGGUG-CGCCGGCGG-----UCCG----AGGGgUGu -5'
18272 3' -64.8 NC_004681.1 + 32322 0.66 0.324998
Target:  5'- gCCGCGCuGCCGCUgcgauGGCcugCUCCACc -3'
miRNA:   3'- gGGUGCGcCGGCGGu----CCGa--GGGGUGu -5'
18272 3' -64.8 NC_004681.1 + 33380 0.66 0.347389
Target:  5'- gUCGCGCGcGCCGUguGGCaCCugaaCCGCAu -3'
miRNA:   3'- gGGUGCGC-CGGCGguCCGaGG----GGUGU- -5'
18272 3' -64.8 NC_004681.1 + 33487 0.68 0.240494
Target:  5'- aUCCugGUGGCCGUCuuccucauGCUCauCCCGCAg -3'
miRNA:   3'- -GGGugCGCCGGCGGuc------CGAG--GGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 36766 0.67 0.309271
Target:  5'- aCCAgCGCGuCUGCCAGGCcgcuggcccgccCCCCGCu -3'
miRNA:   3'- gGGU-GCGCcGGCGGUCCGa-----------GGGGUGu -5'
18272 3' -64.8 NC_004681.1 + 37762 0.8 0.033583
Target:  5'- -aCGCGCGGCCGCU-GGCgaggCCCCGCAg -3'
miRNA:   3'- ggGUGCGCCGGCGGuCCGa---GGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 38926 0.67 0.296841
Target:  5'- cUCCACGCuGCCGCCguAGGCccggauggUCUCgGCGg -3'
miRNA:   3'- -GGGUGCGcCGGCGG--UCCG--------AGGGgUGU- -5'
18272 3' -64.8 NC_004681.1 + 39429 0.68 0.252193
Target:  5'- --uGCGgGGgUGCCAGGCUUccaCCCGCAc -3'
miRNA:   3'- gggUGCgCCgGCGGUCCGAG---GGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 40317 0.71 0.170822
Target:  5'- uCCCGCGCaaCCGUCAaGCUCCuCCACGa -3'
miRNA:   3'- -GGGUGCGccGGCGGUcCGAGG-GGUGU- -5'
18272 3' -64.8 NC_004681.1 + 41545 0.71 0.166606
Target:  5'- uUCCGCaagcaaaucGCGGCCGCCAugcaGCgccaCCCCGCAg -3'
miRNA:   3'- -GGGUG---------CGCCGGCGGUc---CGa---GGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 42234 0.66 0.362918
Target:  5'- uCCgCACaCGGCCGCCGaGCUgcuggUCCCGCc -3'
miRNA:   3'- -GG-GUGcGCCGGCGGUcCGA-----GGGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.