miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18272 3' -64.8 NC_004681.1 + 45585 0.67 0.283488
Target:  5'- gCCCGCaaGGUgGCCGGuGcCUCCuCCGCGu -3'
miRNA:   3'- -GGGUGcgCCGgCGGUC-C-GAGG-GGUGU- -5'
18272 3' -64.8 NC_004681.1 + 9835 0.69 0.231464
Target:  5'- gUCCGCaGCGGCCGCaAGGCgaagacgaaccggcCCaCCGCAg -3'
miRNA:   3'- -GGGUG-CGCCGGCGgUCCGa-------------GG-GGUGU- -5'
18272 3' -64.8 NC_004681.1 + 33487 0.68 0.240494
Target:  5'- aUCCugGUGGCCGUCuuccucauGCUCauCCCGCAg -3'
miRNA:   3'- -GGGugCGCCGGCGGuc------CGAG--GGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 19552 0.68 0.252193
Target:  5'- aCCUACaGCGGCauCCAGcgcuucccGUUCCCCGCAc -3'
miRNA:   3'- -GGGUG-CGCCGgcGGUC--------CGAGGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 39429 0.68 0.252193
Target:  5'- --uGCGgGGgUGCCAGGCUUccaCCCGCAc -3'
miRNA:   3'- gggUGCgCCgGCGGUCCGAG---GGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 12188 0.68 0.258217
Target:  5'- aCCCggACcCGG-CGUCGGGCuUCCCCGCGc -3'
miRNA:   3'- -GGG--UGcGCCgGCGGUCCG-AGGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 50010 0.68 0.276992
Target:  5'- uCCCGCGC-GCCGUCuGGCcgCgCUACAa -3'
miRNA:   3'- -GGGUGCGcCGGCGGuCCGa-GgGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 51727 0.68 0.276992
Target:  5'- aCCugGUGGUCGUCGgcGGCcgCCCCGg- -3'
miRNA:   3'- gGGugCGCCGGCGGU--CCGa-GGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 2830 0.67 0.283488
Target:  5'- gCCCGCGgGGaCCGCCGcuacacGGUcaccgUCCCCGa- -3'
miRNA:   3'- -GGGUGCgCC-GGCGGU------CCG-----AGGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 22272 0.69 0.223799
Target:  5'- cUCCGCGUGGCgGCgUGGGCgCCCUGCc -3'
miRNA:   3'- -GGGUGCGCCGgCG-GUCCGaGGGGUGu -5'
18272 3' -64.8 NC_004681.1 + 15883 0.69 0.223799
Target:  5'- gCCugGCGGCCGCguGGgUCaCCGu- -3'
miRNA:   3'- gGGugCGCCGGCGguCCgAGgGGUgu -5'
18272 3' -64.8 NC_004681.1 + 50272 0.69 0.208098
Target:  5'- uCCCGCGCccaCCGCaagaaGGGCcacgUCCCCGCGg -3'
miRNA:   3'- -GGGUGCGcc-GGCGg----UCCG----AGGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 75419 0.74 0.105239
Target:  5'- uUCCGCGCGGCCGUacucgCGGcGCagCCCACGu -3'
miRNA:   3'- -GGGUGCGCCGGCG-----GUC-CGagGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 18912 0.72 0.136118
Target:  5'- aCCugGcCGGUCcCCAGGCUCCCguCGCGg -3'
miRNA:   3'- gGGugC-GCCGGcGGUCCGAGGG--GUGU- -5'
18272 3' -64.8 NC_004681.1 + 55978 0.71 0.154514
Target:  5'- gCCgguGCuCGGCUGCCAGGC-CCUCACGc -3'
miRNA:   3'- gGG---UGcGCCGGCGGUCCGaGGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 41545 0.71 0.166606
Target:  5'- uUCCGCaagcaaaucGCGGCCGCCAugcaGCgccaCCCCGCAg -3'
miRNA:   3'- -GGGUG---------CGCCGGCGGUc---CGa---GGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 44934 0.7 0.175133
Target:  5'- cCCCACGCGguggaGCCGCCaccgcgagcucGGGCUCaggCCCAa- -3'
miRNA:   3'- -GGGUGCGC-----CGGCGG-----------UCCGAG---GGGUgu -5'
18272 3' -64.8 NC_004681.1 + 61759 0.7 0.193358
Target:  5'- aCCAgacCGCGGCCGCCAucGGCcaggagCUCUACGu -3'
miRNA:   3'- gGGU---GCGCCGGCGGU--CCGa-----GGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 56756 0.7 0.198167
Target:  5'- aCCUACGaCGuGCCGCgGGGCgaggCCCACc -3'
miRNA:   3'- -GGGUGC-GC-CGGCGgUCCGag--GGGUGu -5'
18272 3' -64.8 NC_004681.1 + 31902 0.7 0.198167
Target:  5'- cCUCGCgGCGGCCGCCaucgcGGGCcucaUCCCgACc -3'
miRNA:   3'- -GGGUG-CGCCGGCGG-----UCCG----AGGGgUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.