miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18272 3' -64.8 NC_004681.1 + 22910 0.67 0.310677
Target:  5'- uUCCugGUGGCCGuUCAGGUggaaCCCGu- -3'
miRNA:   3'- -GGGugCGCCGGC-GGUCCGag--GGGUgu -5'
18272 3' -64.8 NC_004681.1 + 36766 0.67 0.309271
Target:  5'- aCCAgCGCGuCUGCCAGGCcgcuggcccgccCCCCGCu -3'
miRNA:   3'- gGGU-GCGCcGGCGGUCCGa-----------GGGGUGu -5'
18272 3' -64.8 NC_004681.1 + 27030 0.67 0.297521
Target:  5'- gCCUACGCGGUCGCCuucgaguccguggucGGCgucgagggaCCUACAa -3'
miRNA:   3'- -GGGUGCGCCGGCGGu--------------CCGag-------GGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 38926 0.67 0.296841
Target:  5'- cUCCACGCuGCCGCCguAGGCccggauggUCUCgGCGg -3'
miRNA:   3'- -GGGUGCGcCGGCGG--UCCG--------AGGGgUGU- -5'
18272 3' -64.8 NC_004681.1 + 30068 0.67 0.290104
Target:  5'- cUCC-CGCuGUCGCgCAGGCUCagCCGCAc -3'
miRNA:   3'- -GGGuGCGcCGGCG-GUCCGAGg-GGUGU- -5'
18272 3' -64.8 NC_004681.1 + 26539 0.67 0.290104
Target:  5'- aCUCugGCGGCgCGaagGGGCUUCCCGa- -3'
miRNA:   3'- -GGGugCGCCG-GCgg-UCCGAGGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 3026 0.67 0.28612
Target:  5'- gCgCGCGUGGCggugccgucgcccaGCCAGGC-CCCCAgGa -3'
miRNA:   3'- -GgGUGCGCCGg-------------CGGUCCGaGGGGUgU- -5'
18272 3' -64.8 NC_004681.1 + 45585 0.67 0.283488
Target:  5'- gCCCGCaaGGUgGCCGGuGcCUCCuCCGCGu -3'
miRNA:   3'- -GGGUGcgCCGgCGGUC-C-GAGG-GGUGU- -5'
18272 3' -64.8 NC_004681.1 + 2830 0.67 0.283488
Target:  5'- gCCCGCGgGGaCCGCCGcuacacGGUcaccgUCCCCGa- -3'
miRNA:   3'- -GGGUGCgCC-GGCGGU------CCG-----AGGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 8386 0.67 0.283488
Target:  5'- uCCUugGCGGCguccgCGCCaccgAGGCUCUUCAgCAu -3'
miRNA:   3'- -GGGugCGCCG-----GCGG----UCCGAGGGGU-GU- -5'
18272 3' -64.8 NC_004681.1 + 51727 0.68 0.276992
Target:  5'- aCCugGUGGUCGUCGgcGGCcgCCCCGg- -3'
miRNA:   3'- gGGugCGCCGGCGGU--CCGa-GGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 50010 0.68 0.276992
Target:  5'- uCCCGCGC-GCCGUCuGGCcgCgCUACAa -3'
miRNA:   3'- -GGGUGCGcCGGCGGuCCGa-GgGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 24948 0.68 0.264357
Target:  5'- gCCUugGCGGCCGCCGcccGCgCCgCCGa- -3'
miRNA:   3'- -GGGugCGCCGGCGGUc--CGaGG-GGUgu -5'
18272 3' -64.8 NC_004681.1 + 25085 0.68 0.264357
Target:  5'- gCCgACGCcuguGCCGCCAGaGC-CCCCGu- -3'
miRNA:   3'- -GGgUGCGc---CGGCGGUC-CGaGGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 12188 0.68 0.258217
Target:  5'- aCCCggACcCGG-CGUCGGGCuUCCCCGCGc -3'
miRNA:   3'- -GGG--UGcGCCgGCGGUCCG-AGGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 39429 0.68 0.252193
Target:  5'- --uGCGgGGgUGCCAGGCUUccaCCCGCAc -3'
miRNA:   3'- gggUGCgCCgGCGGUCCGAG---GGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 19552 0.68 0.252193
Target:  5'- aCCUACaGCGGCauCCAGcgcuucccGUUCCCCGCAc -3'
miRNA:   3'- -GGGUG-CGCCGgcGGUC--------CGAGGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 69869 0.68 0.246286
Target:  5'- -gCGCGCGGCCGCU-GGCaaaCCUACu -3'
miRNA:   3'- ggGUGCGCCGGCGGuCCGag-GGGUGu -5'
18272 3' -64.8 NC_004681.1 + 18484 0.68 0.240494
Target:  5'- gCCGcCGCGGCCGCCGccuGGCcUgCCAUg -3'
miRNA:   3'- gGGU-GCGCCGGCGGU---CCGaGgGGUGu -5'
18272 3' -64.8 NC_004681.1 + 33487 0.68 0.240494
Target:  5'- aUCCugGUGGCCGUCuuccucauGCUCauCCCGCAg -3'
miRNA:   3'- -GGGugCGCCGGCGGuc------CGAG--GGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.