Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18272 | 5' | -57.2 | NC_004681.1 | + | 24744 | 0.67 | 0.602105 |
Target: 5'- gUUGUCGGGGUCcgcGGUGUUguCgCGGGa -3' miRNA: 3'- aAGCAGUCCCAGa--CCACGAguG-GCUC- -5' |
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18272 | 5' | -57.2 | NC_004681.1 | + | 35627 | 0.68 | 0.570173 |
Target: 5'- -aCGU-GGGGUUcgacaUGGUGCgCGCCGAGu -3' miRNA: 3'- aaGCAgUCCCAG-----ACCACGaGUGGCUC- -5' |
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18272 | 5' | -57.2 | NC_004681.1 | + | 40543 | 0.69 | 0.518001 |
Target: 5'- --gGUCAGGGagUGGaGCcacUCACCGAGc -3' miRNA: 3'- aagCAGUCCCagACCaCG---AGUGGCUC- -5' |
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18272 | 5' | -57.2 | NC_004681.1 | + | 47127 | 0.7 | 0.420283 |
Target: 5'- cUCGUCGGGGUC-GG-GCUCGUCGGu -3' miRNA: 3'- aAGCAGUCCCAGaCCaCGAGUGGCUc -5' |
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18272 | 5' | -57.2 | NC_004681.1 | + | 55967 | 0.7 | 0.411128 |
Target: 5'- cUCGUCGGGGUgCcGGUGCUCGgCUGccAGg -3' miRNA: 3'- aAGCAGUCCCA-GaCCACGAGU-GGC--UC- -5' |
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18272 | 5' | -57.2 | NC_004681.1 | + | 15935 | 1.05 | 0.001644 |
Target: 5'- cUUCGUCAGGGUCUGGUGCUCACCGAGc -3' miRNA: 3'- -AAGCAGUCCCAGACCACGAGUGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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