Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18273 | 3' | -58.4 | NC_004681.1 | + | 543 | 0.68 | 0.475302 |
Target: 5'- cGgCCAGGUuggacgcccaGCGGAGGCCcuCGUCg -3' miRNA: 3'- aCgGGUCUAug--------CGCCUCCGGucGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 716 | 0.67 | 0.525673 |
Target: 5'- gGCCgAag-GCGCGGAGGaaguucucgaCGGCGUCg -3' miRNA: 3'- aCGGgUcuaUGCGCCUCCg---------GUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 1063 | 0.69 | 0.40015 |
Target: 5'- aUGCCCGGGgcucguaGCGcCGGuaggucagggugAGGUCGGCGUCu -3' miRNA: 3'- -ACGGGUCUa------UGC-GCC------------UCCGGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 2023 | 0.71 | 0.340947 |
Target: 5'- cGgCCAGGUGguCGUGGAGGgCGGCcgCa -3' miRNA: 3'- aCgGGUCUAU--GCGCCUCCgGUCGuaG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 4170 | 0.75 | 0.177797 |
Target: 5'- aGCgCgGGGUugGCGuGGGGCCAGCAc- -3' miRNA: 3'- aCG-GgUCUAugCGC-CUCCGGUCGUag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 5900 | 0.69 | 0.418229 |
Target: 5'- aGUaCCAGGUugG-GGcGGCCAGCGUUc -3' miRNA: 3'- aCG-GGUCUAugCgCCuCCGGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 6528 | 0.66 | 0.577928 |
Target: 5'- gGUCCAGAgACGCgacaGGAGuGCUGGCcgGUCg -3' miRNA: 3'- aCGGGUCUaUGCG----CCUC-CGGUCG--UAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 8083 | 0.75 | 0.173171 |
Target: 5'- aGUCCAGAgaaacugGCGCGaAGGCgAGCAUCu -3' miRNA: 3'- aCGGGUCUa------UGCGCcUCCGgUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 10280 | 0.68 | 0.465513 |
Target: 5'- -aCUCGGAgcCGgGGAGGCCGGUcguGUCg -3' miRNA: 3'- acGGGUCUauGCgCCUCCGGUCG---UAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 12683 | 0.71 | 0.317586 |
Target: 5'- cGCCgCGGAgcucaacCGUauGGAGGCUGGCAUCg -3' miRNA: 3'- aCGG-GUCUau-----GCG--CCUCCGGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 16095 | 1.09 | 0.000601 |
Target: 5'- aUGCCCAGAUACGCGGAGGCCAGCAUCu -3' miRNA: 3'- -ACGGGUCUAUGCGCCUCCGGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 17935 | 0.75 | 0.192339 |
Target: 5'- cGCCCGGGUugGU-GAGGCCGGUg-- -3' miRNA: 3'- aCGGGUCUAugCGcCUCCGGUCGuag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 19238 | 0.66 | 0.620529 |
Target: 5'- uUGCCCAGcuuCuuGGGGGuCCAGgCGUCc -3' miRNA: 3'- -ACGGGUCuauGcgCCUCC-GGUC-GUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 20625 | 0.72 | 0.288344 |
Target: 5'- uUGUaCGGGUcuGCGCGGAGGCguGCGUg -3' miRNA: 3'- -ACGgGUCUA--UGCGCCUCCGguCGUAg -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 23480 | 0.66 | 0.588535 |
Target: 5'- aGCCaCuGGcgaACGUGGAGGCgGGCAg- -3' miRNA: 3'- aCGG-GuCUa--UGCGCCUCCGgUCGUag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 23778 | 0.71 | 0.310072 |
Target: 5'- aUGUCCgcGGAggcggGCGCguaGGAGGCCAGC-UCg -3' miRNA: 3'- -ACGGG--UCUa----UGCG---CCUCCGGUCGuAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 25675 | 0.7 | 0.382577 |
Target: 5'- gGCCaCAGGg--GCGG-GGCCAgGCGUCg -3' miRNA: 3'- aCGG-GUCUaugCGCCuCCGGU-CGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 26337 | 0.71 | 0.317586 |
Target: 5'- aUGCCCcaccGCGUaGGGGGCgGGCAUCg -3' miRNA: 3'- -ACGGGucuaUGCG-CCUCCGgUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 26442 | 0.67 | 0.505258 |
Target: 5'- gUGCCCAcaccacuUAUGCaGGucGGUCAGCGUCg -3' miRNA: 3'- -ACGGGUcu-----AUGCG-CCu-CCGGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 26830 | 0.67 | 0.535998 |
Target: 5'- aGCCgAGGUugGCcGGGGCgGGCu-- -3' miRNA: 3'- aCGGgUCUAugCGcCUCCGgUCGuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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