Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18273 | 3' | -58.4 | NC_004681.1 | + | 52969 | 0.69 | 0.40015 |
Target: 5'- gGCUCGGGcACGCGGGcaggccgauGGCCAGCc-- -3' miRNA: 3'- aCGGGUCUaUGCGCCU---------CCGGUCGuag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 61300 | 0.69 | 0.40015 |
Target: 5'- cGCgCCAGAUGgugcaGCGGAGGaaugUGGCGUCg -3' miRNA: 3'- aCG-GGUCUAUg----CGCCUCCg---GUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 25675 | 0.7 | 0.382577 |
Target: 5'- gGCCaCAGGg--GCGG-GGCCAgGCGUCg -3' miRNA: 3'- aCGG-GUCUaugCGCCuCCGGU-CGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 36888 | 0.7 | 0.357198 |
Target: 5'- cUGCCUAGucaGCGgGGggcGGGCCAGCGg- -3' miRNA: 3'- -ACGGGUCua-UGCgCC---UCCGGUCGUag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 58549 | 0.7 | 0.357198 |
Target: 5'- aUGCCCAGGagAC-CuG-GGCCAGCGUCa -3' miRNA: 3'- -ACGGGUCUa-UGcGcCuCCGGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 2023 | 0.71 | 0.340947 |
Target: 5'- cGgCCAGGUGguCGUGGAGGgCGGCcgCa -3' miRNA: 3'- aCgGGUCUAU--GCGCCUCCgGUCGuaG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 39038 | 0.71 | 0.333024 |
Target: 5'- aGCCgCAGAUGCaCGGuGGCCGGUu-- -3' miRNA: 3'- aCGG-GUCUAUGcGCCuCCGGUCGuag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 26337 | 0.71 | 0.317586 |
Target: 5'- aUGCCCcaccGCGUaGGGGGCgGGCAUCg -3' miRNA: 3'- -ACGGGucuaUGCG-CCUCCGgUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 12683 | 0.71 | 0.317586 |
Target: 5'- cGCCgCGGAgcucaacCGUauGGAGGCUGGCAUCg -3' miRNA: 3'- aCGG-GUCUau-----GCG--CCUCCGGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 23778 | 0.71 | 0.310072 |
Target: 5'- aUGUCCgcGGAggcggGCGCguaGGAGGCCAGC-UCg -3' miRNA: 3'- -ACGGG--UCUa----UGCG---CCUCCGGUCGuAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 20625 | 0.72 | 0.288344 |
Target: 5'- uUGUaCGGGUcuGCGCGGAGGCguGCGUg -3' miRNA: 3'- -ACGgGUCUA--UGCGCCUCCGguCGUAg -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 30836 | 0.72 | 0.281372 |
Target: 5'- cUGCCCGGAcccauCGUGGAGGaCGGCAc- -3' miRNA: 3'- -ACGGGUCUau---GCGCCUCCgGUCGUag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 17935 | 0.75 | 0.192339 |
Target: 5'- cGCCCGGGUugGU-GAGGCCGGUg-- -3' miRNA: 3'- aCGGGUCUAugCGcCUCCGGUCGuag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 4170 | 0.75 | 0.177797 |
Target: 5'- aGCgCgGGGUugGCGuGGGGCCAGCAc- -3' miRNA: 3'- aCG-GgUCUAugCGC-CUCCGGUCGUag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 8083 | 0.75 | 0.173171 |
Target: 5'- aGUCCAGAgaaacugGCGCGaAGGCgAGCAUCu -3' miRNA: 3'- aCGGGUCUa------UGCGCcUCCGgUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 42128 | 0.76 | 0.143701 |
Target: 5'- cUGCUCAGGUugGCGcgcacGAGGUUGGCGUCg -3' miRNA: 3'- -ACGGGUCUAugCGC-----CUCCGGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 16095 | 1.09 | 0.000601 |
Target: 5'- aUGCCCAGAUACGCGGAGGCCAGCAUCu -3' miRNA: 3'- -ACGGGUCUAUGCGCCUCCGGUCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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