miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18274 3' -55.7 NC_004681.1 + 22554 0.78 0.205695
Target:  5'- aCGAGGCCACCcagaagauggucUGGGUCGcCAGCCGc -3'
miRNA:   3'- gGCUCUGGUGGu-----------ACCCAGUaGUCGGU- -5'
18274 3' -55.7 NC_004681.1 + 6908 0.66 0.784643
Target:  5'- uCCGuGGCCACCAccgUGGGcUCGUU--CCAc -3'
miRNA:   3'- -GGCuCUGGUGGU---ACCC-AGUAGucGGU- -5'
18274 3' -55.7 NC_004681.1 + 67121 0.66 0.765113
Target:  5'- aUGAGACCACCAcGGG-CGgaaaGGCUu -3'
miRNA:   3'- gGCUCUGGUGGUaCCCaGUag--UCGGu -5'
18274 3' -55.7 NC_004681.1 + 44133 0.67 0.745065
Target:  5'- cCCGAGGCCGCgGgccUGGcccUCAcCGGCCGc -3'
miRNA:   3'- -GGCUCUGGUGgU---ACCc--AGUaGUCGGU- -5'
18274 3' -55.7 NC_004681.1 + 39346 0.67 0.734874
Target:  5'- uCCGAGggGCCGCUGUGG---AUCGGCCu -3'
miRNA:   3'- -GGCUC--UGGUGGUACCcagUAGUCGGu -5'
18274 3' -55.7 NC_004681.1 + 33535 0.67 0.724585
Target:  5'- aUCGAGACCGUCAaGGGUCuGUUGGCg- -3'
miRNA:   3'- -GGCUCUGGUGGUaCCCAG-UAGUCGgu -5'
18274 3' -55.7 NC_004681.1 + 16615 0.68 0.693238
Target:  5'- aCUGcAGGCCGCgAUGGaGgcggcgggCAUCAGCCc -3'
miRNA:   3'- -GGC-UCUGGUGgUACC-Ca-------GUAGUCGGu -5'
18274 3' -55.7 NC_004681.1 + 23549 0.68 0.682663
Target:  5'- cCCGGcACCACCGucucUGGcacaguguUCGUCAGCCAc -3'
miRNA:   3'- -GGCUcUGGUGGU----ACCc-------AGUAGUCGGU- -5'
18274 3' -55.7 NC_004681.1 + 17950 0.68 0.661388
Target:  5'- gCCGAGGgCGgcuCCGUGGGcCAccgCAGCCc -3'
miRNA:   3'- -GGCUCUgGU---GGUACCCaGUa--GUCGGu -5'
18274 3' -55.7 NC_004681.1 + 48459 0.7 0.575991
Target:  5'- aCCGAaGCCuuuCCGcUGGGUCAuUCAGCgCAu -3'
miRNA:   3'- -GGCUcUGGu--GGU-ACCCAGU-AGUCG-GU- -5'
18274 3' -55.7 NC_004681.1 + 58231 0.7 0.575991
Target:  5'- gCCGGGggacuACCGCCAUGGaGUCuUCgcuGGCCu -3'
miRNA:   3'- -GGCUC-----UGGUGGUACC-CAGuAG---UCGGu -5'
18274 3' -55.7 NC_004681.1 + 54542 0.7 0.565428
Target:  5'- aCCGcAGAgcccuucaucauCCGCCcgGUGGGaacCAUCAGCCAg -3'
miRNA:   3'- -GGC-UCU------------GGUGG--UACCCa--GUAGUCGGU- -5'
18274 3' -55.7 NC_004681.1 + 8521 0.75 0.316051
Target:  5'- gUGAGACCGCCcccGcGGcCAUCGGCCAg -3'
miRNA:   3'- gGCUCUGGUGGua-C-CCaGUAGUCGGU- -5'
18274 3' -55.7 NC_004681.1 + 16371 0.75 0.301203
Target:  5'- aCGAGGgCGCCAagUGGGUUGccUCGGCCAc -3'
miRNA:   3'- gGCUCUgGUGGU--ACCCAGU--AGUCGGU- -5'
18274 3' -55.7 NC_004681.1 + 21225 0.69 0.597241
Target:  5'- -gGGGACCACCAcaaUGGGcgUCAUgAGCg- -3'
miRNA:   3'- ggCUCUGGUGGU---ACCC--AGUAgUCGgu -5'
18274 3' -55.7 NC_004681.1 + 49325 0.71 0.513514
Target:  5'- gCCGGuGACCAagacgaCGcGGGUCAcuUCAGCCGu -3'
miRNA:   3'- -GGCU-CUGGUg-----GUaCCCAGU--AGUCGGU- -5'
18274 3' -55.7 NC_004681.1 + 28752 0.72 0.434985
Target:  5'- uUGAGACCgACCGUGGGUCcgauaguUCcGCCu -3'
miRNA:   3'- gGCUCUGG-UGGUACCCAGu------AGuCGGu -5'
18274 3' -55.7 NC_004681.1 + 15914 0.72 0.416451
Target:  5'- aCCGAG-CCACUGUGcgacguugcggaGGcCGUCAGCCAu -3'
miRNA:   3'- -GGCUCuGGUGGUAC------------CCaGUAGUCGGU- -5'
18274 3' -55.7 NC_004681.1 + 62571 0.8 0.142835
Target:  5'- uUCGuAGACCACCGUgGGGUCGugccccUCGGCCAu -3'
miRNA:   3'- -GGC-UCUGGUGGUA-CCCAGU------AGUCGGU- -5'
18274 3' -55.7 NC_004681.1 + 1419 0.66 0.802644
Target:  5'- uUGAGGCaGCCcuUGucggcgaGGUCGUCGGCCAg -3'
miRNA:   3'- gGCUCUGgUGGu-AC-------CCAGUAGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.