miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18274 5' -57.3 NC_004681.1 + 54833 0.66 0.711499
Target:  5'- --gGGCCUGGUCAUCgUcGGAGa--- -3'
miRNA:   3'- guaCCGGACCAGUGGgAaCCUCcacc -5'
18274 5' -57.3 NC_004681.1 + 46470 0.66 0.711499
Target:  5'- --cGGCCUGGaggucUCcCCCgaGGAGGacgacUGGa -3'
miRNA:   3'- guaCCGGACC-----AGuGGGaaCCUCC-----ACC- -5'
18274 5' -57.3 NC_004681.1 + 27603 0.66 0.701102
Target:  5'- --gGcGCCUgGGUCACCCUcGGuGGcgcUGGc -3'
miRNA:   3'- guaC-CGGA-CCAGUGGGAaCCuCC---ACC- -5'
18274 5' -57.3 NC_004681.1 + 7429 0.67 0.637753
Target:  5'- --cGGCggGGUCAgcCCCgggugccGGGGGUGGa -3'
miRNA:   3'- guaCCGgaCCAGU--GGGaa-----CCUCCACC- -5'
18274 5' -57.3 NC_004681.1 + 60876 0.67 0.616499
Target:  5'- gCGUGGCUggucaagcuaGUCACCCcaccUGGGGGUGu -3'
miRNA:   3'- -GUACCGGac--------CAGUGGGa---ACCUCCACc -5'
18274 5' -57.3 NC_004681.1 + 53697 0.67 0.605886
Target:  5'- --gGGCCUcuucCACCCacugcgGGAGGUGGa -3'
miRNA:   3'- guaCCGGAcca-GUGGGaa----CCUCCACC- -5'
18274 5' -57.3 NC_004681.1 + 41728 0.67 0.605886
Target:  5'- -uUGGCCaGGaa---CUUGGAGGUGGg -3'
miRNA:   3'- guACCGGaCCaguggGAACCUCCACC- -5'
18274 5' -57.3 NC_004681.1 + 1626 0.68 0.595295
Target:  5'- -cUGGCCcGGUCACCa---GGGGUGa -3'
miRNA:   3'- guACCGGaCCAGUGGgaacCUCCACc -5'
18274 5' -57.3 NC_004681.1 + 28400 0.69 0.492162
Target:  5'- aAUGGCCUggcGGUCACCCcggcucccgcGGAGaUGGa -3'
miRNA:   3'- gUACCGGA---CCAGUGGGaa--------CCUCcACC- -5'
18274 5' -57.3 NC_004681.1 + 44781 0.74 0.280386
Target:  5'- uCGUGGgaccUCUGGacCGCCC-UGGAGGUGGg -3'
miRNA:   3'- -GUACC----GGACCa-GUGGGaACCUCCACC- -5'
18274 5' -57.3 NC_004681.1 + 10501 0.82 0.07676
Target:  5'- aAUGGCCUGGUCAgCCUUGGAcagcgaGGUGc -3'
miRNA:   3'- gUACCGGACCAGUgGGAACCU------CCACc -5'
18274 5' -57.3 NC_004681.1 + 16499 1.09 0.00096
Target:  5'- gCAUGGCCUGGUCACCCUUGGAGGUGGc -3'
miRNA:   3'- -GUACCGGACCAGUGGGAACCUCCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.