miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 3' -54.9 NC_004681.1 + 68974 0.68 0.720156
Target:  5'- -gCGUCGGCcgcggccaguaGAGCgUGgGUACCauGCGGUa -3'
miRNA:   3'- gaGCAGCCG-----------UUCG-ACgUAUGG--UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 32103 0.68 0.720156
Target:  5'- gUCGUcacCGGCAuccaGGaaGCGgucACCGCGGCg -3'
miRNA:   3'- gAGCA---GCCGU----UCgaCGUa--UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 57194 0.67 0.728508
Target:  5'- aUCGUCGGCAcuaguccguccuGGCggagGCAgacgccuucguCCACGGa -3'
miRNA:   3'- gAGCAGCCGU------------UCGa---CGUau---------GGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 66861 0.67 0.740922
Target:  5'- -gCGUCGauGUAGGCgGCGUuGCCAcCGGCc -3'
miRNA:   3'- gaGCAGC--CGUUCGaCGUA-UGGU-GCCG- -5'
18275 3' -54.9 NC_004681.1 + 43807 0.67 0.740922
Target:  5'- -cCGagGGC-GGCgGUGUACUGCGGCg -3'
miRNA:   3'- gaGCagCCGuUCGaCGUAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 27929 0.67 0.751151
Target:  5'- cCUCGgCGGCAcggcacGGCUGUGggcAUCACuGGCg -3'
miRNA:   3'- -GAGCaGCCGU------UCGACGUa--UGGUG-CCG- -5'
18275 3' -54.9 NC_004681.1 + 50987 0.67 0.758243
Target:  5'- aCUCGaguaUUGGCAGGCcGCcUGCUugucgggguacucgGCGGCg -3'
miRNA:   3'- -GAGC----AGCCGUUCGaCGuAUGG--------------UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 72766 0.67 0.761264
Target:  5'- -gCGUCGGCAGGCUcCGggaaACGGUu -3'
miRNA:   3'- gaGCAGCCGUUCGAcGUauggUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 14547 0.67 0.761264
Target:  5'- --gGUCGGCAucGCcGCcaccgccACCACGGCc -3'
miRNA:   3'- gagCAGCCGUu-CGaCGua-----UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 12050 0.67 0.771248
Target:  5'- uCUCcagCGGCAGGUUGU--ACCGCaGGUa -3'
miRNA:   3'- -GAGca-GCCGUUCGACGuaUGGUG-CCG- -5'
18275 3' -54.9 NC_004681.1 + 30769 0.67 0.771248
Target:  5'- -aUGgaaGGCGAGCUug--ACCGCGGCg -3'
miRNA:   3'- gaGCag-CCGUUCGAcguaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 39355 0.67 0.771248
Target:  5'- aCUUGacgCGGC-GGCccuugGCGcccuUGCCGCGGCg -3'
miRNA:   3'- -GAGCa--GCCGuUCGa----CGU----AUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 51009 0.67 0.771248
Target:  5'- -aCGUCGGgGAGCUcuuccacaaggGCGUcaucgcccucgGCgACGGCg -3'
miRNA:   3'- gaGCAGCCgUUCGA-----------CGUA-----------UGgUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 73999 0.67 0.771248
Target:  5'- uCUCGUaGGCAuuGCuUGCAgUGCuCAUGGCc -3'
miRNA:   3'- -GAGCAgCCGUu-CG-ACGU-AUG-GUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 62621 0.67 0.781094
Target:  5'- -gUGUCGGaggcGGCUGCcaggGUGCCcAUGGCc -3'
miRNA:   3'- gaGCAGCCgu--UCGACG----UAUGG-UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 12408 0.67 0.781094
Target:  5'- gCUCGUCGGUGAGCcgGUGacggACgaggACGGCg -3'
miRNA:   3'- -GAGCAGCCGUUCGa-CGUa---UGg---UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 52546 0.67 0.781094
Target:  5'- cCUCGUgGGCGAGCaaGCGUuccucaaucGCCuCGcGCa -3'
miRNA:   3'- -GAGCAgCCGUUCGa-CGUA---------UGGuGC-CG- -5'
18275 3' -54.9 NC_004681.1 + 59804 0.66 0.787899
Target:  5'- -gUGUUGGCAGGCcGCAcuCCcagcagggggcgugGCGGCg -3'
miRNA:   3'- gaGCAGCCGUUCGaCGUauGG--------------UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 46906 0.66 0.789829
Target:  5'- gCUCG-CGGCGAcugguucGCUgGCAcUACCuACGGUg -3'
miRNA:   3'- -GAGCaGCCGUU-------CGA-CGU-AUGG-UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 39279 0.66 0.790792
Target:  5'- gUCGagGGCGAGCaucu--CCGCGGCc -3'
miRNA:   3'- gAGCagCCGUUCGacguauGGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.