miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 3' -54.9 NC_004681.1 + 39279 0.66 0.790792
Target:  5'- gUCGagGGCGAGCaucu--CCGCGGCc -3'
miRNA:   3'- gAGCagCCGUUCGacguauGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 47922 0.66 0.797485
Target:  5'- uUCGgggcacgCGGUgacGAGCauccaccaggugggUGCGUACUugGGCg -3'
miRNA:   3'- gAGCa------GCCG---UUCG--------------ACGUAUGGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 13649 0.66 0.797485
Target:  5'- -aCGUCucuucgcccaugauGGCGauGGCggaGCGaACCACGGCg -3'
miRNA:   3'- gaGCAG--------------CCGU--UCGa--CGUaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 27752 0.66 0.800329
Target:  5'- uUCGgugacgcgCGGCAgcGGCgGCA-GCgGCGGCg -3'
miRNA:   3'- gAGCa-------GCCGU--UCGaCGUaUGgUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 24621 0.66 0.800329
Target:  5'- uCUCGUCuccuuGGCUGCAUcccgcgacaacACCGCGGa -3'
miRNA:   3'- -GAGCAGccgu-UCGACGUA-----------UGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 30423 0.66 0.809697
Target:  5'- -gCGUCGGCAAcccguaUGUGUACgGCGGg -3'
miRNA:   3'- gaGCAGCCGUUcg----ACGUAUGgUGCCg -5'
18275 3' -54.9 NC_004681.1 + 30149 0.66 0.809697
Target:  5'- --gGUCGGgcuCAGGCgGCGcgGCCGCGGa -3'
miRNA:   3'- gagCAGCC---GUUCGaCGUa-UGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 68482 0.66 0.818885
Target:  5'- cCUUGUCGucCAAGCUGUGUuCCAC-GCa -3'
miRNA:   3'- -GAGCAGCc-GUUCGACGUAuGGUGcCG- -5'
18275 3' -54.9 NC_004681.1 + 10231 0.66 0.824308
Target:  5'- gCUCccCGGUucGCUGCGggugaccuacacCCACGGCu -3'
miRNA:   3'- -GAGcaGCCGuuCGACGUau----------GGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 46699 0.66 0.827884
Target:  5'- gUCcUCGGCGAGUggGCcgGUCugGGCu -3'
miRNA:   3'- gAGcAGCCGUUCGa-CGuaUGGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 7465 0.66 0.827884
Target:  5'- uCUCGgccGCGGGCUugGCGggaggcuucGCCGCGGCg -3'
miRNA:   3'- -GAGCagcCGUUCGA--CGUa--------UGGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.