miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 3' -54.9 NC_004681.1 + 39355 0.67 0.771248
Target:  5'- aCUUGacgCGGC-GGCccuugGCGcccuUGCCGCGGCg -3'
miRNA:   3'- -GAGCa--GCCGuUCGa----CGU----AUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 40595 0.73 0.432137
Target:  5'- -aCGUCGGgCAcgauugcuacaucguGGCgGCGUcgGCCGCGGCg -3'
miRNA:   3'- gaGCAGCC-GU---------------UCGaCGUA--UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 42425 0.68 0.71701
Target:  5'- uCUCGUCGGCGcgcAGcCUGCAcgacccguacuucaUcuACCAcguCGGCg -3'
miRNA:   3'- -GAGCAGCCGU---UC-GACGU--------------A--UGGU---GCCG- -5'
18275 3' -54.9 NC_004681.1 + 42526 0.69 0.666955
Target:  5'- --gGUCGuGCAGGCUGCGcGCCgacgagACGGg -3'
miRNA:   3'- gagCAGC-CGUUCGACGUaUGG------UGCCg -5'
18275 3' -54.9 NC_004681.1 + 42773 0.7 0.602169
Target:  5'- uCUUGUUGGCcaaGGGCUugGCGguggACCACGGg -3'
miRNA:   3'- -GAGCAGCCG---UUCGA--CGUa---UGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 43807 0.67 0.740922
Target:  5'- -cCGagGGC-GGCgGUGUACUGCGGCg -3'
miRNA:   3'- gaGCagCCGuUCGaCGUAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 45200 0.69 0.634572
Target:  5'- -gCGUCGGCcccggucuuGAGCgag--ACCGCGGCg -3'
miRNA:   3'- gaGCAGCCG---------UUCGacguaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 46699 0.66 0.827884
Target:  5'- gUCcUCGGCGAGUggGCcgGUCugGGCu -3'
miRNA:   3'- gAGcAGCCGUUCGa-CGuaUGGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 46906 0.66 0.789829
Target:  5'- gCUCG-CGGCGAcugguucGCUgGCAcUACCuACGGUg -3'
miRNA:   3'- -GAGCaGCCGUU-------CGA-CGU-AUGG-UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 47922 0.66 0.797485
Target:  5'- uUCGgggcacgCGGUgacGAGCauccaccaggugggUGCGUACUugGGCg -3'
miRNA:   3'- gAGCa------GCCG---UUCG--------------ACGUAUGGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 49621 0.69 0.656179
Target:  5'- -aUGUCGGCAcccUUGUcgACCAUGGCc -3'
miRNA:   3'- gaGCAGCCGUuc-GACGuaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 50931 0.72 0.486811
Target:  5'- cCUCuUCGGCGAGCUGgGUG--GCGGUg -3'
miRNA:   3'- -GAGcAGCCGUUCGACgUAUggUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 50987 0.67 0.758243
Target:  5'- aCUCGaguaUUGGCAGGCcGCcUGCUugucgggguacucgGCGGCg -3'
miRNA:   3'- -GAGC----AGCCGUUCGaCGuAUGG--------------UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 51009 0.67 0.771248
Target:  5'- -aCGUCGGgGAGCUcuuccacaaggGCGUcaucgcccucgGCgACGGCg -3'
miRNA:   3'- gaGCAGCCgUUCGA-----------CGUA-----------UGgUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 52546 0.67 0.781094
Target:  5'- cCUCGUgGGCGAGCaaGCGUuccucaaucGCCuCGcGCa -3'
miRNA:   3'- -GAGCAgCCGUUCGa-CGUA---------UGGuGC-CG- -5'
18275 3' -54.9 NC_004681.1 + 57072 0.68 0.719108
Target:  5'- gUgGUCGGCGuAGC-GCAUguccaucGCCugGGUg -3'
miRNA:   3'- gAgCAGCCGU-UCGaCGUA-------UGGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 57194 0.67 0.728508
Target:  5'- aUCGUCGGCAcuaguccguccuGGCggagGCAgacgccuucguCCACGGa -3'
miRNA:   3'- gAGCAGCCGU------------UCGa---CGUau---------GGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 57336 0.71 0.517417
Target:  5'- -cCG-CcGCAAGCUcGCGUACCGCGGg -3'
miRNA:   3'- gaGCaGcCGUUCGA-CGUAUGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 59804 0.66 0.787899
Target:  5'- -gUGUUGGCAGGCcGCAcuCCcagcagggggcgugGCGGCg -3'
miRNA:   3'- gaGCAGCCGUUCGaCGUauGG--------------UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 60662 0.7 0.602169
Target:  5'- uUCGUCGGCcAGCgGCccgagGCgUGCGGCg -3'
miRNA:   3'- gAGCAGCCGuUCGaCGua---UG-GUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.