miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 3' -54.9 NC_004681.1 + 49621 0.69 0.656179
Target:  5'- -aUGUCGGCAcccUUGUcgACCAUGGCc -3'
miRNA:   3'- gaGCAGCCGUuc-GACGuaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 47922 0.66 0.797485
Target:  5'- uUCGgggcacgCGGUgacGAGCauccaccaggugggUGCGUACUugGGCg -3'
miRNA:   3'- gAGCa------GCCG---UUCG--------------ACGUAUGGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 46906 0.66 0.789829
Target:  5'- gCUCG-CGGCGAcugguucGCUgGCAcUACCuACGGUg -3'
miRNA:   3'- -GAGCaGCCGUU-------CGA-CGU-AUGG-UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 46699 0.66 0.827884
Target:  5'- gUCcUCGGCGAGUggGCcgGUCugGGCu -3'
miRNA:   3'- gAGcAGCCGUUCGa-CGuaUGGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 45200 0.69 0.634572
Target:  5'- -gCGUCGGCcccggucuuGAGCgag--ACCGCGGCg -3'
miRNA:   3'- gaGCAGCCG---------UUCGacguaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 43807 0.67 0.740922
Target:  5'- -cCGagGGC-GGCgGUGUACUGCGGCg -3'
miRNA:   3'- gaGCagCCGuUCGaCGUAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 42773 0.7 0.602169
Target:  5'- uCUUGUUGGCcaaGGGCUugGCGguggACCACGGg -3'
miRNA:   3'- -GAGCAGCCG---UUCGA--CGUa---UGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 42526 0.69 0.666955
Target:  5'- --gGUCGuGCAGGCUGCGcGCCgacgagACGGg -3'
miRNA:   3'- gagCAGC-CGUUCGACGUaUGG------UGCCg -5'
18275 3' -54.9 NC_004681.1 + 42425 0.68 0.71701
Target:  5'- uCUCGUCGGCGcgcAGcCUGCAcgacccguacuucaUcuACCAcguCGGCg -3'
miRNA:   3'- -GAGCAGCCGU---UC-GACGU--------------A--UGGU---GCCG- -5'
18275 3' -54.9 NC_004681.1 + 40595 0.73 0.432137
Target:  5'- -aCGUCGGgCAcgauugcuacaucguGGCgGCGUcgGCCGCGGCg -3'
miRNA:   3'- gaGCAGCC-GU---------------UCGaCGUA--UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 39355 0.67 0.771248
Target:  5'- aCUUGacgCGGC-GGCccuugGCGcccuUGCCGCGGCg -3'
miRNA:   3'- -GAGCa--GCCGuUCGa----CGU----AUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 39279 0.66 0.790792
Target:  5'- gUCGagGGCGAGCaucu--CCGCGGCc -3'
miRNA:   3'- gAGCagCCGUUCGacguauGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 39079 0.73 0.400742
Target:  5'- cCUCGUCGGCcacccAGC-GCAUgaacugcuucACCGCGGUc -3'
miRNA:   3'- -GAGCAGCCGu----UCGaCGUA----------UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 33100 0.74 0.382966
Target:  5'- --gGUCGGCAGGCcGC-UACCGgGGUa -3'
miRNA:   3'- gagCAGCCGUUCGaCGuAUGGUgCCG- -5'
18275 3' -54.9 NC_004681.1 + 32103 0.68 0.720156
Target:  5'- gUCGUcacCGGCAuccaGGaaGCGgucACCGCGGCg -3'
miRNA:   3'- gAGCA---GCCGU----UCgaCGUa--UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 32026 0.68 0.6777
Target:  5'- -gUGUCGGCAcGGCcgGUGUGauCCugGGCa -3'
miRNA:   3'- gaGCAGCCGU-UCGa-CGUAU--GGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 30953 0.7 0.591406
Target:  5'- --gGUCGGCGGGCgGCGUGCCguccuccacgAUGGg -3'
miRNA:   3'- gagCAGCCGUUCGaCGUAUGG----------UGCCg -5'
18275 3' -54.9 NC_004681.1 + 30769 0.67 0.771248
Target:  5'- -aUGgaaGGCGAGCUug--ACCGCGGCg -3'
miRNA:   3'- gaGCag-CCGUUCGAcguaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 30423 0.66 0.809697
Target:  5'- -gCGUCGGCAAcccguaUGUGUACgGCGGg -3'
miRNA:   3'- gaGCAGCCGUUcg----ACGUAUGgUGCCg -5'
18275 3' -54.9 NC_004681.1 + 30149 0.66 0.809697
Target:  5'- --gGUCGGgcuCAGGCgGCGcgGCCGCGGa -3'
miRNA:   3'- gagCAGCC---GUUCGaCGUa-UGGUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.