miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 3' -54.9 NC_004681.1 + 62621 0.67 0.781094
Target:  5'- -gUGUCGGaggcGGCUGCcaggGUGCCcAUGGCc -3'
miRNA:   3'- gaGCAGCCgu--UCGACG----UAUGG-UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 11964 0.7 0.559346
Target:  5'- -aCGUCGGUAcGCUGCGcgcGCCGCGa- -3'
miRNA:   3'- gaGCAGCCGUuCGACGUa--UGGUGCcg -5'
18275 3' -54.9 NC_004681.1 + 16655 1.11 0.001201
Target:  5'- gCUCGUCGGCAAGCUGCAUACCACGGCc -3'
miRNA:   3'- -GAGCAGCCGUUCGACGUAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 5748 0.84 0.086449
Target:  5'- gUCGUCGGCGaagcucaccAGCUGCGUGCCcacacCGGCa -3'
miRNA:   3'- gAGCAGCCGU---------UCGACGUAUGGu----GCCG- -5'
18275 3' -54.9 NC_004681.1 + 14483 0.74 0.349021
Target:  5'- -gCGUCGGCGAuGCgGUucuCCGCGGCg -3'
miRNA:   3'- gaGCAGCCGUU-CGaCGuauGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 66232 0.73 0.409824
Target:  5'- gUCGcgCGGCAAGCgcaugaaGCAcACCACGGa -3'
miRNA:   3'- gAGCa-GCCGUUCGa------CGUaUGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 57336 0.71 0.517417
Target:  5'- -cCG-CcGCAAGCUcGCGUACCGCGGg -3'
miRNA:   3'- gaGCaGcCGUUCGA-CGUAUGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 24842 0.69 0.623761
Target:  5'- -gCGUCGGCGGcGCggGCGgcgGCCGCcaaGGCu -3'
miRNA:   3'- gaGCAGCCGUU-CGa-CGUa--UGGUG---CCG- -5'
18275 3' -54.9 NC_004681.1 + 10231 0.66 0.824308
Target:  5'- gCUCccCGGUucGCUGCGggugaccuacacCCACGGCu -3'
miRNA:   3'- -GAGcaGCCGuuCGACGUau----------GGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 30423 0.66 0.809697
Target:  5'- -gCGUCGGCAAcccguaUGUGUACgGCGGg -3'
miRNA:   3'- gaGCAGCCGUUcg----ACGUAUGgUGCCg -5'
18275 3' -54.9 NC_004681.1 + 27134 0.69 0.666955
Target:  5'- gCUCGUCcuGCAAGCguucucgGCGgGCUACGGg -3'
miRNA:   3'- -GAGCAGc-CGUUCGa------CGUaUGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 28816 0.68 0.6777
Target:  5'- cCUCGUCauauaccgacuGGCAGGCgcagGCAcgggcuCCACGGa -3'
miRNA:   3'- -GAGCAG-----------CCGUUCGa---CGUau----GGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 12408 0.67 0.781094
Target:  5'- gCUCGUCGGUGAGCcgGUGacggACgaggACGGCg -3'
miRNA:   3'- -GAGCAGCCGUUCGa-CGUa---UGg---UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 24621 0.66 0.800329
Target:  5'- uCUCGUCuccuuGGCUGCAUcccgcgacaacACCGCGGa -3'
miRNA:   3'- -GAGCAGccgu-UCGACGUA-----------UGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 27752 0.66 0.800329
Target:  5'- uUCGgugacgcgCGGCAgcGGCgGCA-GCgGCGGCg -3'
miRNA:   3'- gAGCa-------GCCGU--UCGaCGUaUGgUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 30149 0.66 0.809697
Target:  5'- --gGUCGGgcuCAGGCgGCGcgGCCGCGGa -3'
miRNA:   3'- gagCAGCC---GUUCGaCGUa-UGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 32103 0.68 0.720156
Target:  5'- gUCGUcacCGGCAuccaGGaaGCGgucACCGCGGCg -3'
miRNA:   3'- gAGCA---GCCGU----UCgaCGUa--UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 42425 0.68 0.71701
Target:  5'- uCUCGUCGGCGcgcAGcCUGCAcgacccguacuucaUcuACCAcguCGGCg -3'
miRNA:   3'- -GAGCAGCCGU---UC-GACGU--------------A--UGGU---GCCG- -5'
18275 3' -54.9 NC_004681.1 + 30074 0.68 0.699053
Target:  5'- -cUGUCGcGCAGGCucagccgcacaUGUGUgacaACCACGGCu -3'
miRNA:   3'- gaGCAGC-CGUUCG-----------ACGUA----UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 32026 0.68 0.6777
Target:  5'- -gUGUCGGCAcGGCcgGUGUGauCCugGGCa -3'
miRNA:   3'- gaGCAGCCGU-UCGa-CGUAU--GGugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.