Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18275 | 3' | -54.9 | NC_004681.1 | + | 30149 | 0.66 | 0.809697 |
Target: 5'- --gGUCGGgcuCAGGCgGCGcgGCCGCGGa -3' miRNA: 3'- gagCAGCC---GUUCGaCGUa-UGGUGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 27752 | 0.66 | 0.800329 |
Target: 5'- uUCGgugacgcgCGGCAgcGGCgGCA-GCgGCGGCg -3' miRNA: 3'- gAGCa-------GCCGU--UCGaCGUaUGgUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 24621 | 0.66 | 0.800329 |
Target: 5'- uCUCGUCuccuuGGCUGCAUcccgcgacaacACCGCGGa -3' miRNA: 3'- -GAGCAGccgu-UCGACGUA-----------UGGUGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 46906 | 0.66 | 0.789829 |
Target: 5'- gCUCG-CGGCGAcugguucGCUgGCAcUACCuACGGUg -3' miRNA: 3'- -GAGCaGCCGUU-------CGA-CGU-AUGG-UGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 12408 | 0.67 | 0.781094 |
Target: 5'- gCUCGUCGGUGAGCcgGUGacggACgaggACGGCg -3' miRNA: 3'- -GAGCAGCCGUUCGa-CGUa---UGg---UGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 73999 | 0.67 | 0.771248 |
Target: 5'- uCUCGUaGGCAuuGCuUGCAgUGCuCAUGGCc -3' miRNA: 3'- -GAGCAgCCGUu-CG-ACGU-AUG-GUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 51009 | 0.67 | 0.771248 |
Target: 5'- -aCGUCGGgGAGCUcuuccacaaggGCGUcaucgcccucgGCgACGGCg -3' miRNA: 3'- gaGCAGCCgUUCGA-----------CGUA-----------UGgUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 14547 | 0.67 | 0.761264 |
Target: 5'- --gGUCGGCAucGCcGCcaccgccACCACGGCc -3' miRNA: 3'- gagCAGCCGUu-CGaCGua-----UGGUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 27929 | 0.67 | 0.751151 |
Target: 5'- cCUCGgCGGCAcggcacGGCUGUGggcAUCACuGGCg -3' miRNA: 3'- -GAGCaGCCGU------UCGACGUa--UGGUG-CCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 32103 | 0.68 | 0.720156 |
Target: 5'- gUCGUcacCGGCAuccaGGaaGCGgucACCGCGGCg -3' miRNA: 3'- gAGCA---GCCGU----UCgaCGUa--UGGUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 18375 | 0.76 | 0.294927 |
Target: 5'- aUCGacaUGGCAGGCcagGCGgcgGCCGCGGCg -3' miRNA: 3'- gAGCa--GCCGUUCGa--CGUa--UGGUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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