miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 3' -54.9 NC_004681.1 + 30769 0.67 0.771248
Target:  5'- -aUGgaaGGCGAGCUug--ACCGCGGCg -3'
miRNA:   3'- gaGCag-CCGUUCGAcguaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 12050 0.67 0.771248
Target:  5'- uCUCcagCGGCAGGUUGU--ACCGCaGGUa -3'
miRNA:   3'- -GAGca-GCCGUUCGACGuaUGGUG-CCG- -5'
18275 3' -54.9 NC_004681.1 + 72766 0.67 0.761264
Target:  5'- -gCGUCGGCAGGCUcCGggaaACGGUu -3'
miRNA:   3'- gaGCAGCCGUUCGAcGUauggUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 14547 0.67 0.761264
Target:  5'- --gGUCGGCAucGCcGCcaccgccACCACGGCc -3'
miRNA:   3'- gagCAGCCGUu-CGaCGua-----UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 50987 0.67 0.758243
Target:  5'- aCUCGaguaUUGGCAGGCcGCcUGCUugucgggguacucgGCGGCg -3'
miRNA:   3'- -GAGC----AGCCGUUCGaCGuAUGG--------------UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 27929 0.67 0.751151
Target:  5'- cCUCGgCGGCAcggcacGGCUGUGggcAUCACuGGCg -3'
miRNA:   3'- -GAGCaGCCGU------UCGACGUa--UGGUG-CCG- -5'
18275 3' -54.9 NC_004681.1 + 66861 0.67 0.740922
Target:  5'- -gCGUCGauGUAGGCgGCGUuGCCAcCGGCc -3'
miRNA:   3'- gaGCAGC--CGUUCGaCGUA-UGGU-GCCG- -5'
18275 3' -54.9 NC_004681.1 + 43807 0.67 0.740922
Target:  5'- -cCGagGGC-GGCgGUGUACUGCGGCg -3'
miRNA:   3'- gaGCagCCGuUCGaCGUAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 57194 0.67 0.728508
Target:  5'- aUCGUCGGCAcuaguccguccuGGCggagGCAgacgccuucguCCACGGa -3'
miRNA:   3'- gAGCAGCCGU------------UCGa---CGUau---------GGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 32103 0.68 0.720156
Target:  5'- gUCGUcacCGGCAuccaGGaaGCGgucACCGCGGCg -3'
miRNA:   3'- gAGCA---GCCGU----UCgaCGUa--UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 68974 0.68 0.720156
Target:  5'- -gCGUCGGCcgcggccaguaGAGCgUGgGUACCauGCGGUa -3'
miRNA:   3'- gaGCAGCCG-----------UUCG-ACgUAUGG--UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 57072 0.68 0.719108
Target:  5'- gUgGUCGGCGuAGC-GCAUguccaucGCCugGGUg -3'
miRNA:   3'- gAgCAGCCGU-UCGaCGUA-------UGGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 42425 0.68 0.71701
Target:  5'- uCUCGUCGGCGcgcAGcCUGCAcgacccguacuucaUcuACCAcguCGGCg -3'
miRNA:   3'- -GAGCAGCCGU---UC-GACGU--------------A--UGGU---GCCG- -5'
18275 3' -54.9 NC_004681.1 + 22743 0.68 0.699053
Target:  5'- -aCGUaGGCGAuCUGCuUGCgCGCGGCg -3'
miRNA:   3'- gaGCAgCCGUUcGACGuAUG-GUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 30074 0.68 0.699053
Target:  5'- -cUGUCGcGCAGGCucagccgcacaUGUGUgacaACCACGGCu -3'
miRNA:   3'- gaGCAGC-CGUUCG-----------ACGUA----UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 68632 0.68 0.699053
Target:  5'- cCUCGgggagaaccacCGGCAuGGCgcccagGCGUGCCGCGaGCc -3'
miRNA:   3'- -GAGCa----------GCCGU-UCGa-----CGUAUGGUGC-CG- -5'
18275 3' -54.9 NC_004681.1 + 6636 0.68 0.688403
Target:  5'- cCUUGggGGguGGCuucUGCAUgaggcGCCGCGGCu -3'
miRNA:   3'- -GAGCagCCguUCG---ACGUA-----UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 25221 0.68 0.688403
Target:  5'- uCUCGUCGuuguacuccaGCGGGgUGgGU-CCGCGGCc -3'
miRNA:   3'- -GAGCAGC----------CGUUCgACgUAuGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 28816 0.68 0.6777
Target:  5'- cCUCGUCauauaccgacuGGCAGGCgcagGCAcgggcuCCACGGa -3'
miRNA:   3'- -GAGCAG-----------CCGUUCGa---CGUau----GGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 32026 0.68 0.6777
Target:  5'- -gUGUCGGCAcGGCcgGUGUGauCCugGGCa -3'
miRNA:   3'- gaGCAGCCGU-UCGa-CGUAU--GGugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.