Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18275 | 5' | -59.3 | NC_004681.1 | + | 16621 | 1.1 | 0.000524 |
Target: 5'- gGGACCGUUGCCGCCACCCGCCAUCUGg -3' miRNA: 3'- -CCUGGCAACGGCGGUGGGCGGUAGAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 27906 | 0.74 | 0.199167 |
Target: 5'- -cACCGUUGgCGCCGCCgCGcCCAUCUc -3' miRNA: 3'- ccUGGCAACgGCGGUGG-GC-GGUAGAc -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 61762 | 0.74 | 0.209494 |
Target: 5'- aGACCGcgGCCGCCAUCgGCCAggagcUCUa -3' miRNA: 3'- cCUGGCaaCGGCGGUGGgCGGU-----AGAc -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 24985 | 0.73 | 0.231533 |
Target: 5'- -uGCCGggGUCGCCGCCCucGCCAUugCUGg -3' miRNA: 3'- ccUGGCaaCGGCGGUGGG--CGGUA--GAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 12595 | 0.73 | 0.23734 |
Target: 5'- -cGCCGUUGCUGCCuuCCGCgGUCa- -3' miRNA: 3'- ccUGGCAACGGCGGugGGCGgUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 18500 | 0.73 | 0.242671 |
Target: 5'- gGGugCGaaggcguUUGCCGCCGCggCCGCCGcCUGg -3' miRNA: 3'- -CCugGC-------AACGGCGGUG--GGCGGUaGAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 9019 | 0.72 | 0.274773 |
Target: 5'- aGGCCGUUGacgccgggguacCCGCCGCCaGCCAggagCUGg -3' miRNA: 3'- cCUGGCAAC------------GGCGGUGGgCGGUa---GAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 842 | 0.72 | 0.295198 |
Target: 5'- aGGGCCGgguagGCCGUCACCaGUCGUCc- -3' miRNA: 3'- -CCUGGCaa---CGGCGGUGGgCGGUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 30841 | 0.72 | 0.295198 |
Target: 5'- cGGACCcaucGUggaggacgGCaCGCCGCCCGCCGacccgCUGg -3' miRNA: 3'- -CCUGG----CAa-------CG-GCGGUGGGCGGUa----GAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 28250 | 0.72 | 0.302264 |
Target: 5'- cGGuGCCGcUGCCGCCGCucgauccgccgCCGCCGUUg- -3' miRNA: 3'- -CC-UGGCaACGGCGGUG-----------GGCGGUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 62276 | 0.71 | 0.331826 |
Target: 5'- -cGCCGaucUUGCCGCCcguGCCCGCCGaaaUCUc -3' miRNA: 3'- ccUGGC---AACGGCGG---UGGGCGGU---AGAc -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 27858 | 0.71 | 0.339541 |
Target: 5'- -cGCCGcUGCCGCCGCugCCGCgCGUCa- -3' miRNA: 3'- ccUGGCaACGGCGGUG--GGCG-GUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 25107 | 0.7 | 0.363459 |
Target: 5'- aGACCG-UGUCGCCACCCuuGCCGc--- -3' miRNA: 3'- cCUGGCaACGGCGGUGGG--CGGUagac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 16726 | 0.7 | 0.363459 |
Target: 5'- cGGGCUGaUGcCCGCCGCCU-CCAUCg- -3' miRNA: 3'- -CCUGGCaAC-GGCGGUGGGcGGUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 53070 | 0.69 | 0.397121 |
Target: 5'- -aGCCGUcaaacuUGCCGCCAgCCUGCCAg--- -3' miRNA: 3'- ccUGGCA------ACGGCGGU-GGGCGGUagac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 60596 | 0.68 | 0.46061 |
Target: 5'- uGACCGccaUUGCCGCCACUaauCCcgCUGc -3' miRNA: 3'- cCUGGC---AACGGCGGUGGgc-GGuaGAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 28093 | 0.68 | 0.479721 |
Target: 5'- aGGACUacUGCCGCCGuugCCGCCGUUg- -3' miRNA: 3'- -CCUGGcaACGGCGGUg--GGCGGUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 25168 | 0.68 | 0.479721 |
Target: 5'- aGGCUGagcgaggUGCCGcCCGCgCCGCCcUCUGc -3' miRNA: 3'- cCUGGCa------ACGGC-GGUG-GGCGGuAGAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 28160 | 0.68 | 0.479721 |
Target: 5'- uGGACUucUUGCCGCCACC-GCC-UCg- -3' miRNA: 3'- -CCUGGc-AACGGCGGUGGgCGGuAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 17997 | 0.68 | 0.489421 |
Target: 5'- cGGACCcucgccGCCGCCGCCCaggaauuCCuUCUGg -3' miRNA: 3'- -CCUGGcaa---CGGCGGUGGGc------GGuAGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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