miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 5' -59.3 NC_004681.1 + 28160 0.68 0.479721
Target:  5'- uGGACUucUUGCCGCCACC-GCC-UCg- -3'
miRNA:   3'- -CCUGGc-AACGGCGGUGGgCGGuAGac -5'
18275 5' -59.3 NC_004681.1 + 60596 0.68 0.46061
Target:  5'- uGACCGccaUUGCCGCCACUaauCCcgCUGc -3'
miRNA:   3'- cCUGGC---AACGGCGGUGGgc-GGuaGAC- -5'
18275 5' -59.3 NC_004681.1 + 53070 0.69 0.397121
Target:  5'- -aGCCGUcaaacuUGCCGCCAgCCUGCCAg--- -3'
miRNA:   3'- ccUGGCA------ACGGCGGU-GGGCGGUagac -5'
18275 5' -59.3 NC_004681.1 + 25107 0.7 0.363459
Target:  5'- aGACCG-UGUCGCCACCCuuGCCGc--- -3'
miRNA:   3'- cCUGGCaACGGCGGUGGG--CGGUagac -5'
18275 5' -59.3 NC_004681.1 + 16726 0.7 0.363459
Target:  5'- cGGGCUGaUGcCCGCCGCCU-CCAUCg- -3'
miRNA:   3'- -CCUGGCaAC-GGCGGUGGGcGGUAGac -5'
18275 5' -59.3 NC_004681.1 + 27858 0.71 0.339541
Target:  5'- -cGCCGcUGCCGCCGCugCCGCgCGUCa- -3'
miRNA:   3'- ccUGGCaACGGCGGUG--GGCG-GUAGac -5'
18275 5' -59.3 NC_004681.1 + 62276 0.71 0.331826
Target:  5'- -cGCCGaucUUGCCGCCcguGCCCGCCGaaaUCUc -3'
miRNA:   3'- ccUGGC---AACGGCGG---UGGGCGGU---AGAc -5'
18275 5' -59.3 NC_004681.1 + 28250 0.72 0.302264
Target:  5'- cGGuGCCGcUGCCGCCGCucgauccgccgCCGCCGUUg- -3'
miRNA:   3'- -CC-UGGCaACGGCGGUG-----------GGCGGUAGac -5'
18275 5' -59.3 NC_004681.1 + 842 0.72 0.295198
Target:  5'- aGGGCCGgguagGCCGUCACCaGUCGUCc- -3'
miRNA:   3'- -CCUGGCaa---CGGCGGUGGgCGGUAGac -5'
18275 5' -59.3 NC_004681.1 + 30841 0.72 0.295198
Target:  5'- cGGACCcaucGUggaggacgGCaCGCCGCCCGCCGacccgCUGg -3'
miRNA:   3'- -CCUGG----CAa-------CG-GCGGUGGGCGGUa----GAC- -5'
18275 5' -59.3 NC_004681.1 + 9019 0.72 0.274773
Target:  5'- aGGCCGUUGacgccgggguacCCGCCGCCaGCCAggagCUGg -3'
miRNA:   3'- cCUGGCAAC------------GGCGGUGGgCGGUa---GAC- -5'
18275 5' -59.3 NC_004681.1 + 18500 0.73 0.242671
Target:  5'- gGGugCGaaggcguUUGCCGCCGCggCCGCCGcCUGg -3'
miRNA:   3'- -CCugGC-------AACGGCGGUG--GGCGGUaGAC- -5'
18275 5' -59.3 NC_004681.1 + 12595 0.73 0.23734
Target:  5'- -cGCCGUUGCUGCCuuCCGCgGUCa- -3'
miRNA:   3'- ccUGGCAACGGCGGugGGCGgUAGac -5'
18275 5' -59.3 NC_004681.1 + 24985 0.73 0.231533
Target:  5'- -uGCCGggGUCGCCGCCCucGCCAUugCUGg -3'
miRNA:   3'- ccUGGCaaCGGCGGUGGG--CGGUA--GAC- -5'
18275 5' -59.3 NC_004681.1 + 61762 0.74 0.209494
Target:  5'- aGACCGcgGCCGCCAUCgGCCAggagcUCUa -3'
miRNA:   3'- cCUGGCaaCGGCGGUGGgCGGU-----AGAc -5'
18275 5' -59.3 NC_004681.1 + 27906 0.74 0.199167
Target:  5'- -cACCGUUGgCGCCGCCgCGcCCAUCUc -3'
miRNA:   3'- ccUGGCAACgGCGGUGG-GC-GGUAGAc -5'
18275 5' -59.3 NC_004681.1 + 16621 1.1 0.000524
Target:  5'- gGGACCGUUGCCGCCACCCGCCAUCUGg -3'
miRNA:   3'- -CCUGGCAACGGCGGUGGGCGGUAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.