miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18276 5' -55.7 NC_004681.1 + 3007 0.67 0.637821
Target:  5'- cGCCcAGcCAGGCCcccaggauguagggGUCGAGCGGGAg-- -3'
miRNA:   3'- -UGGuUC-GUCCGG--------------CGGCUUGUCCUaaa -5'
18276 5' -55.7 NC_004681.1 + 4122 0.68 0.597317
Target:  5'- uGCgCAAGCAGGCCGCUGAGg------- -3'
miRNA:   3'- -UG-GUUCGUCCGGCGGCUUguccuaaa -5'
18276 5' -55.7 NC_004681.1 + 5283 0.66 0.706337
Target:  5'- gGCCAuGGCGGG-CG-CGGACAGGGUc- -3'
miRNA:   3'- -UGGU-UCGUCCgGCgGCUUGUCCUAaa -5'
18276 5' -55.7 NC_004681.1 + 9039 0.7 0.501253
Target:  5'- aGCCGgucgaacgcugcAGCAGGCCGuuGAcgcCGGGGUa- -3'
miRNA:   3'- -UGGU------------UCGUCCGGCggCUu--GUCCUAaa -5'
18276 5' -55.7 NC_004681.1 + 9082 0.69 0.532661
Target:  5'- gGCCGAGguGG-CGCCGAcaGCgAGGAg-- -3'
miRNA:   3'- -UGGUUCguCCgGCGGCU--UG-UCCUaaa -5'
18276 5' -55.7 NC_004681.1 + 11283 0.69 0.553988
Target:  5'- gUCAAG-AGGCUGCCGggUGGGGg-- -3'
miRNA:   3'- uGGUUCgUCCGGCGGCuuGUCCUaaa -5'
18276 5' -55.7 NC_004681.1 + 14411 0.66 0.706337
Target:  5'- aGCgCAAGCAGGCgGCCGA--GGcGAa-- -3'
miRNA:   3'- -UG-GUUCGUCCGgCGGCUugUC-CUaaa -5'
18276 5' -55.7 NC_004681.1 + 14466 0.66 0.748525
Target:  5'- cGCCGcGCGcGCCgccuccGCCGAGCAGGGc-- -3'
miRNA:   3'- -UGGUuCGUcCGG------CGGCUUGUCCUaaa -5'
18276 5' -55.7 NC_004681.1 + 14892 0.67 0.662994
Target:  5'- cGCCucGCAGGUCGCCGAcgucgccucGCAGu---- -3'
miRNA:   3'- -UGGuuCGUCCGGCGGCU---------UGUCcuaaa -5'
18276 5' -55.7 NC_004681.1 + 16333 0.68 0.57556
Target:  5'- aGCCGAGCAGGCCaucuCCGcuGCGGcGGUg- -3'
miRNA:   3'- -UGGUUCGUCCGGc---GGCu-UGUC-CUAaa -5'
18276 5' -55.7 NC_004681.1 + 17236 1.05 0.002146
Target:  5'- gACCAAGCAGGCCGCCGAACAGGAUUUc -3'
miRNA:   3'- -UGGUUCGUCCGGCGGCUUGUCCUAAA- -5'
18276 5' -55.7 NC_004681.1 + 17385 0.66 0.695582
Target:  5'- cGCC-AGCAGGgCGUCGucucCGGGAUa- -3'
miRNA:   3'- -UGGuUCGUCCgGCGGCuu--GUCCUAaa -5'
18276 5' -55.7 NC_004681.1 + 20483 0.72 0.359136
Target:  5'- cUCAGGCGGGCCGucuuCCGGcuucgGCGGGAUUg -3'
miRNA:   3'- uGGUUCGUCCGGC----GGCU-----UGUCCUAAa -5'
18276 5' -55.7 NC_004681.1 + 29583 0.69 0.532661
Target:  5'- cACCGAGguGGUC-CCGGugAGGGa-- -3'
miRNA:   3'- -UGGUUCguCCGGcGGCUugUCCUaaa -5'
18276 5' -55.7 NC_004681.1 + 33113 0.69 0.564747
Target:  5'- uGCCAugucccgaggucGGCAGGCCGCUac-CGGGGUa- -3'
miRNA:   3'- -UGGU------------UCGUCCGGCGGcuuGUCCUAaa -5'
18276 5' -55.7 NC_004681.1 + 39414 0.66 0.738126
Target:  5'- uCCAGcGCGGcGCCGCgCGcGCAGGuAUUUg -3'
miRNA:   3'- uGGUU-CGUC-CGGCG-GCuUGUCC-UAAA- -5'
18276 5' -55.7 NC_004681.1 + 45572 0.67 0.673899
Target:  5'- gAUCAGGguGGCCaGCuCGGAguGGAc-- -3'
miRNA:   3'- -UGGUUCguCCGG-CG-GCUUguCCUaaa -5'
18276 5' -55.7 NC_004681.1 + 46541 0.66 0.723391
Target:  5'- uACCgGAGCAGGCCGCgGGAaccugcgcgguuGGGUg- -3'
miRNA:   3'- -UGG-UUCGUCCGGCGgCUUgu----------CCUAaa -5'
18276 5' -55.7 NC_004681.1 + 49895 0.67 0.680424
Target:  5'- uACCAGGCAGGCaagcacuacucaCCGAAgAGGGa-- -3'
miRNA:   3'- -UGGUUCGUCCGgc----------GGCUUgUCCUaaa -5'
18276 5' -55.7 NC_004681.1 + 50991 0.66 0.738126
Target:  5'- uCCGacucgaguauuGGCAGGCCGCCugcuuguCGGGGUa- -3'
miRNA:   3'- uGGU-----------UCGUCCGGCGGcuu----GUCCUAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.