miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18277 5' -61.1 NC_004681.1 + 18713 0.66 0.491809
Target:  5'- cGUCUUGCcaGcGGUGUucuccCCCGCGGGCu -3'
miRNA:   3'- -UAGGACGcaCaUCGCA-----GGGCGCCCGu -5'
18277 5' -61.1 NC_004681.1 + 42368 0.66 0.491809
Target:  5'- uUCCagGcCGUGaaGGCGccUUCCGCGGGCGg -3'
miRNA:   3'- uAGGa-C-GCACa-UCGC--AGGGCGCCCGU- -5'
18277 5' -61.1 NC_004681.1 + 51996 0.66 0.453396
Target:  5'- -cCCUGCGUGUcgaggaAGUGgucUCCCGCugccGGGUg -3'
miRNA:   3'- uaGGACGCACA------UCGC---AGGGCG----CCCGu -5'
18277 5' -61.1 NC_004681.1 + 27137 0.66 0.453396
Target:  5'- cGUCCUGCa---AGCGUUCUcgGCGGGCu -3'
miRNA:   3'- -UAGGACGcacaUCGCAGGG--CGCCCGu -5'
18277 5' -61.1 NC_004681.1 + 5308 0.67 0.416673
Target:  5'- aGUCCUGCaucUGUGGCGacagcucggCCaugGCGGGCGc -3'
miRNA:   3'- -UAGGACGc--ACAUCGCa--------GGg--CGCCCGU- -5'
18277 5' -61.1 NC_004681.1 + 17300 0.67 0.399005
Target:  5'- -cCCUGC-UGgcGCGcgugCCCGCGGGaCGc -3'
miRNA:   3'- uaGGACGcACauCGCa---GGGCGCCC-GU- -5'
18277 5' -61.1 NC_004681.1 + 61963 0.68 0.381824
Target:  5'- -gCCggGCG-GcAGCGUCaUCGCGGGCAu -3'
miRNA:   3'- uaGGa-CGCaCaUCGCAG-GGCGCCCGU- -5'
18277 5' -61.1 NC_004681.1 + 2929 0.69 0.33332
Target:  5'- -----cCGUGUAGCGgcggucCCCGCGGGCu -3'
miRNA:   3'- uaggacGCACAUCGCa-----GGGCGCCCGu -5'
18277 5' -61.1 NC_004681.1 + 3515 0.69 0.33332
Target:  5'- aGUCCgUGCGcgcGUGGC-UCgCGCGGGCGc -3'
miRNA:   3'- -UAGG-ACGCa--CAUCGcAGgGCGCCCGU- -5'
18277 5' -61.1 NC_004681.1 + 20027 0.69 0.303577
Target:  5'- -aCCUGCGUGUugAGCaggCCCGCGguGGCc -3'
miRNA:   3'- uaGGACGCACA--UCGca-GGGCGC--CCGu -5'
18277 5' -61.1 NC_004681.1 + 17416 1.06 0.000632
Target:  5'- gAUCCUGCGUGUAGCGUCCCGCGGGCAc -3'
miRNA:   3'- -UAGGACGCACAUCGCAGGGCGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.