Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18278 | 3' | -57.7 | NC_004681.1 | + | 49890 | 0.66 | 0.651435 |
Target: 5'- aUCcagCCGUGGcaGCCCUUGGUGCCGu-- -3' miRNA: 3'- -AGa--GGUACUc-UGGGAGCCGCGGCuau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 3145 | 0.73 | 0.281587 |
Target: 5'- aCUgCCAccAGGCCCUUGGCGCCGcgGg -3' miRNA: 3'- aGA-GGUacUCUGGGAGCCGCGGCuaU- -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 68739 | 0.68 | 0.51477 |
Target: 5'- cCUCCAUGAGGCaggggaagcaCUUGGUGCCc--- -3' miRNA: 3'- aGAGGUACUCUGg---------GAGCCGCGGcuau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 20217 | 0.68 | 0.518844 |
Target: 5'- cCUCCAggagGGGuCCgaacgugaucgugggCUCGGCGCCGGg- -3' miRNA: 3'- aGAGGUa---CUCuGG---------------GAGCCGCGGCUau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 60883 | 0.68 | 0.53526 |
Target: 5'- gCUCCuugGUGGGAgCCUUGGC-CUGAUAc -3' miRNA: 3'- aGAGG---UACUCUgGGAGCCGcGGCUAU- -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 9202 | 0.67 | 0.577026 |
Target: 5'- --gCCA-GAG-CCCgagccagCGGCGCCGGUGa -3' miRNA: 3'- agaGGUaCUCuGGGa------GCCGCGGCUAU- -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 51313 | 0.67 | 0.598192 |
Target: 5'- aUCUCCAUGAcGGCCgggguggcguuCUuggagagaagcaUGGCGCCGAg- -3' miRNA: 3'- -AGAGGUACU-CUGG-----------GA------------GCCGCGGCUau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 32113 | 0.66 | 0.640783 |
Target: 5'- --gCCGUGccgacACCCgCGGCGCCGAUc -3' miRNA: 3'- agaGGUACuc---UGGGaGCCGCGGCUAu -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 16750 | 0.66 | 0.640783 |
Target: 5'- --aCCAgUGAGACCCUCgagGGUGuCCGGg- -3' miRNA: 3'- agaGGU-ACUCUGGGAG---CCGC-GGCUau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 33518 | 0.75 | 0.197826 |
Target: 5'- --gUCAUGAGGCCCgagccaaugucUUGGCGCCGAUGc -3' miRNA: 3'- agaGGUACUCUGGG-----------AGCCGCGGCUAU- -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 18601 | 1.07 | 0.001196 |
Target: 5'- gUCUCCAUGAGACCCUCGGCGCCGAUAc -3' miRNA: 3'- -AGAGGUACUCUGGGAGCCGCGGCUAU- -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 61786 | 0.66 | 0.651435 |
Target: 5'- gUUUCCAUcuugGAGA-CCUCGGCGgCGGc- -3' miRNA: 3'- -AGAGGUA----CUCUgGGAGCCGCgGCUau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 31356 | 0.66 | 0.672678 |
Target: 5'- gUCUCCGacGuuGCCguagccaaacaCUCGGCGCCGGUc -3' miRNA: 3'- -AGAGGUa-CucUGG-----------GAGCCGCGGCUAu -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 6390 | 0.7 | 0.43646 |
Target: 5'- -gUCgAgggggagGAGGCCC-CGGCGCCGAa- -3' miRNA: 3'- agAGgUa------CUCUGGGaGCCGCGGCUau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 66932 | 0.69 | 0.46506 |
Target: 5'- aCUCUGUGGcGGCCCUggugcCGcGCGCCGAg- -3' miRNA: 3'- aGAGGUACU-CUGGGA-----GC-CGCGGCUau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 7244 | 0.68 | 0.533198 |
Target: 5'- uUCUCCAggccauccacGACgcggccguccaCCUCGGCGCCGAg- -3' miRNA: 3'- -AGAGGUacu-------CUG-----------GGAGCCGCGGCUau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 2701 | 0.67 | 0.619467 |
Target: 5'- uUCUCCGUGcaAUUCgcggaCGGCGCCGAa- -3' miRNA: 3'- -AGAGGUACucUGGGa----GCCGCGGCUau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 55219 | 0.67 | 0.619467 |
Target: 5'- cCUCCGaauucGAGACCCgcugGGaCGCUGAUAa -3' miRNA: 3'- aGAGGUa----CUCUGGGag--CC-GCGGCUAU- -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 3069 | 0.66 | 0.662069 |
Target: 5'- -gUCCugcgcaagAUGGGAgUCCUCGGCGCCa--- -3' miRNA: 3'- agAGG--------UACUCU-GGGAGCCGCGGcuau -5' |
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18278 | 3' | -57.7 | NC_004681.1 | + | 41048 | 0.66 | 0.672678 |
Target: 5'- --cCCAUGcgacGGCCCucuUCGGCGCCGc-- -3' miRNA: 3'- agaGGUACu---CUGGG---AGCCGCGGCuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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