miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18278 5' -54.2 NC_004681.1 + 1643 0.72 0.514166
Target:  5'- cGCCGCCcAGCUgaaggC-UGGCCCGGUcaccagGGg -3'
miRNA:   3'- -CGGUGGcUUGAa----GuACCGGGCCAa-----CC- -5'
18278 5' -54.2 NC_004681.1 + 9884 0.69 0.736291
Target:  5'- aCCAgCUuGGCUUCA--GCCCGGUUGGc -3'
miRNA:   3'- cGGU-GGcUUGAAGUacCGGGCCAACC- -5'
18278 5' -54.2 NC_004681.1 + 12232 0.7 0.6626
Target:  5'- gGCCcguuCUGGGCUgagUCggGUGGCCCGGUgcugUGGc -3'
miRNA:   3'- -CGGu---GGCUUGA---AG--UACCGGGCCA----ACC- -5'
18278 5' -54.2 NC_004681.1 + 13134 0.77 0.2867
Target:  5'- cGCCACCGccCUUCGUGGCaCGGcgGGu -3'
miRNA:   3'- -CGGUGGCuuGAAGUACCGgGCCaaCC- -5'
18278 5' -54.2 NC_004681.1 + 13376 0.67 0.805092
Target:  5'- cGCCcUCGGACUcgAUGGCCUGGacgcGGa -3'
miRNA:   3'- -CGGuGGCUUGAagUACCGGGCCaa--CC- -5'
18278 5' -54.2 NC_004681.1 + 16512 0.72 0.514166
Target:  5'- aGCCAgCCGuAGCg-CAUGGCCUGGUcacccuUGGa -3'
miRNA:   3'- -CGGU-GGC-UUGaaGUACCGGGCCA------ACC- -5'
18278 5' -54.2 NC_004681.1 + 17462 0.69 0.725978
Target:  5'- gGCuCACCGAucaugGCUUCGU-GCCUGGcaUGGg -3'
miRNA:   3'- -CG-GUGGCU-----UGAAGUAcCGGGCCa-ACC- -5'
18278 5' -54.2 NC_004681.1 + 17635 0.66 0.873252
Target:  5'- uGCCGCCaGGGag-CGUGGCCUGcaugUGGc -3'
miRNA:   3'- -CGGUGG-CUUgaaGUACCGGGCca--ACC- -5'
18278 5' -54.2 NC_004681.1 + 18564 1.12 0.001435
Target:  5'- gGCCACCGAACUUCAUGGCCCGGUUGGc -3'
miRNA:   3'- -CGGUGGCUUGAAGUACCGGGCCAACC- -5'
18278 5' -54.2 NC_004681.1 + 25338 0.67 0.814311
Target:  5'- cGCCGCCGcgGGCgcCAUGGCCgCcGUUGu -3'
miRNA:   3'- -CGGUGGC--UUGaaGUACCGG-GcCAACc -5'
18278 5' -54.2 NC_004681.1 + 29586 0.75 0.38973
Target:  5'- aGCCACCGAG----GUGGuCCCGGUgagGGa -3'
miRNA:   3'- -CGGUGGCUUgaagUACC-GGGCCAa--CC- -5'
18278 5' -54.2 NC_004681.1 + 38375 0.66 0.865489
Target:  5'- cGCCaagugacguACCGccUUUCGUGaGCCCGGagGGu -3'
miRNA:   3'- -CGG---------UGGCuuGAAGUAC-CGGGCCaaCC- -5'
18278 5' -54.2 NC_004681.1 + 38918 0.67 0.814311
Target:  5'- uGCCGCCGua------GGCCCGGaUGGu -3'
miRNA:   3'- -CGGUGGCuugaaguaCCGGGCCaACC- -5'
18278 5' -54.2 NC_004681.1 + 39180 0.72 0.534808
Target:  5'- gGCCACCaGGGCUUgCAcGGCgCGGUcGGa -3'
miRNA:   3'- -CGGUGG-CUUGAA-GUaCCGgGCCAaCC- -5'
18278 5' -54.2 NC_004681.1 + 42177 0.69 0.725978
Target:  5'- gGCC-CCGAACagucuggCGUaGGCCaGGUUGGc -3'
miRNA:   3'- -CGGuGGCUUGaa-----GUA-CCGGgCCAACC- -5'
18278 5' -54.2 NC_004681.1 + 42243 0.68 0.776438
Target:  5'- gGCCGCCGAGCUgc-UGGuCCCGcccgcGGa -3'
miRNA:   3'- -CGGUGGCUUGAaguACC-GGGCcaa--CC- -5'
18278 5' -54.2 NC_004681.1 + 52952 0.68 0.746504
Target:  5'- cGUCACCGA----CGUGGCCUGGcaGGc -3'
miRNA:   3'- -CGGUGGCUugaaGUACCGGGCCaaCC- -5'
18278 5' -54.2 NC_004681.1 + 53163 0.69 0.725978
Target:  5'- gGCCA-CGGACUuccUCAUGGCCgCGacaUUGGa -3'
miRNA:   3'- -CGGUgGCUUGA---AGUACCGG-GCc--AACC- -5'
18278 5' -54.2 NC_004681.1 + 56255 0.69 0.736291
Target:  5'- gGCCGCgGAGCUUCAUcGCCuugaugCGGcggUGGu -3'
miRNA:   3'- -CGGUGgCUUGAAGUAcCGG------GCCa--ACC- -5'
18278 5' -54.2 NC_004681.1 + 58660 0.68 0.756607
Target:  5'- -gCAUCGAGCUUgAcgcUGGCCCaGGUcuccUGGg -3'
miRNA:   3'- cgGUGGCUUGAAgU---ACCGGG-CCA----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.