miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18279 5' -55.9 NC_004681.1 + 36539 0.66 0.767867
Target:  5'- gAUGaGUUCaagcuCUUCGCCGGUUCUcacaGCCCg -3'
miRNA:   3'- -UACaUAAG-----GAAGCGGUCGAGG----CGGGg -5'
18279 5' -55.9 NC_004681.1 + 35479 0.66 0.767867
Target:  5'- gGUGUGUacgCCgUCGCCuucCUCCGaccaCCCg -3'
miRNA:   3'- -UACAUAa--GGaAGCGGuc-GAGGCg---GGG- -5'
18279 5' -55.9 NC_004681.1 + 50217 0.66 0.737373
Target:  5'- -gGUGg----UCGCCAGCUCCaauggcGCCCUc -3'
miRNA:   3'- uaCAUaaggaAGCGGUCGAGG------CGGGG- -5'
18279 5' -55.9 NC_004681.1 + 34721 0.66 0.716513
Target:  5'- uUGggaAUUCCcgcgCGCUucGGCcgCCGCCCCu -3'
miRNA:   3'- uACa--UAAGGaa--GCGG--UCGa-GGCGGGG- -5'
18279 5' -55.9 NC_004681.1 + 45219 0.68 0.630693
Target:  5'- gGUGUAgaCCUgCGCgaCGGCgUCgGCCCCg -3'
miRNA:   3'- -UACAUaaGGAaGCG--GUCG-AGgCGGGG- -5'
18279 5' -55.9 NC_004681.1 + 8501 0.68 0.619868
Target:  5'- gAUGggcgCCUUCGCggaCGGUgagaCCGCCCCc -3'
miRNA:   3'- -UACauaaGGAAGCG---GUCGa---GGCGGGG- -5'
18279 5' -55.9 NC_004681.1 + 25784 0.68 0.619868
Target:  5'- -cGUAcaggCCgaCGCCuGGCcCCGCCCCu -3'
miRNA:   3'- uaCAUaa--GGaaGCGG-UCGaGGCGGGG- -5'
18279 5' -55.9 NC_004681.1 + 57312 0.69 0.555436
Target:  5'- -aGUGacUUCCUggGgCGGCgaUCCGCCCCc -3'
miRNA:   3'- uaCAU--AAGGAagCgGUCG--AGGCGGGG- -5'
18279 5' -55.9 NC_004681.1 + 69831 0.69 0.544859
Target:  5'- -gGUugUCCUgUCGCUAcCUCCGUCCCu -3'
miRNA:   3'- uaCAuaAGGA-AGCGGUcGAGGCGGGG- -5'
18279 5' -55.9 NC_004681.1 + 51727 0.69 0.544859
Target:  5'- ------aCCUgguggUCGUCGGCggCCGCCCCg -3'
miRNA:   3'- uacauaaGGA-----AGCGGUCGa-GGCGGGG- -5'
18279 5' -55.9 NC_004681.1 + 60556 0.69 0.534349
Target:  5'- ---gGUUCg-UCGCUAGCgaUCCGCCCUg -3'
miRNA:   3'- uacaUAAGgaAGCGGUCG--AGGCGGGG- -5'
18279 5' -55.9 NC_004681.1 + 68714 0.72 0.388304
Target:  5'- -gGUGcccUUCaCUUgGCCuGCUCCGCUCCu -3'
miRNA:   3'- uaCAU---AAG-GAAgCGGuCGAGGCGGGG- -5'
18279 5' -55.9 NC_004681.1 + 18943 1.09 0.001143
Target:  5'- gAUGUAUUCCUUCGCCAGCUCCGCCCCc -3'
miRNA:   3'- -UACAUAAGGAAGCGGUCGAGGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.