miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 33306 0.68 0.505071
Target:  5'- -gCGCCGCGguGUACGcCGGgACguucgccguccagGGCa -3'
miRNA:   3'- caGUGGCGCguCGUGC-GCCaUGa------------CCG- -5'
18280 3' -58.6 NC_004681.1 + 34434 0.68 0.499089
Target:  5'- -aCGCCGcCGCGGCGuaagacuuCG-GGUGCUGGg -3'
miRNA:   3'- caGUGGC-GCGUCGU--------GCgCCAUGACCg -5'
18280 3' -58.6 NC_004681.1 + 12682 0.67 0.560141
Target:  5'- -cCGCCGCGgAGCucaacCGUauGGagGCUGGCa -3'
miRNA:   3'- caGUGGCGCgUCGu----GCG--CCa-UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 46892 0.67 0.549796
Target:  5'- uUCACCGUcuucgggcucGCGGCGacUGGUucGCUGGCa -3'
miRNA:   3'- cAGUGGCG----------CGUCGUgcGCCA--UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 5878 0.67 0.580984
Target:  5'- uUCgACCGCGC-GCACGCuGGcuccucgaaUACcGGCa -3'
miRNA:   3'- cAG-UGGCGCGuCGUGCG-CC---------AUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 24758 0.67 0.580984
Target:  5'- aUCACCacgaccCGCAGCGCaucGCGcucGCUGGCg -3'
miRNA:   3'- cAGUGGc-----GCGUCGUG---CGCca-UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 34345 0.67 0.580984
Target:  5'- -aCGCCGCgGCGGCGUGagGGUugUGcGCg -3'
miRNA:   3'- caGUGGCG-CGUCGUGCg-CCAugAC-CG- -5'
18280 3' -58.6 NC_004681.1 + 49329 0.67 0.570539
Target:  5'- cUCACCGUccgccacgGCGGCGcCGCGGgcgcugaccACUGGg -3'
miRNA:   3'- cAGUGGCG--------CGUCGU-GCGCCa--------UGACCg -5'
18280 3' -58.6 NC_004681.1 + 16153 0.67 0.529292
Target:  5'- aGUCugCGUuGCGGCggAUGCGGUGacagcGGCg -3'
miRNA:   3'- -CAGugGCG-CGUCG--UGCGCCAUga---CCG- -5'
18280 3' -58.6 NC_004681.1 + 31987 0.67 0.580984
Target:  5'- -cCGCCGCGaGGUA-GUaGUACUGGCg -3'
miRNA:   3'- caGUGGCGCgUCGUgCGcCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 20668 0.67 0.549796
Target:  5'- gGUCACCGCGgAGUucccacgcaAUGCGGUAgaGaccGCg -3'
miRNA:   3'- -CAGUGGCGCgUCG---------UGCGCCAUgaC---CG- -5'
18280 3' -58.6 NC_004681.1 + 30877 0.66 0.591467
Target:  5'- aGUCAUgGCGCGGC-CGuUGGUGaccaGGCc -3'
miRNA:   3'- -CAGUGgCGCGUCGuGC-GCCAUga--CCG- -5'
18280 3' -58.6 NC_004681.1 + 6678 0.66 0.600929
Target:  5'- -cCAUgGCGCccuugacGGCGCGCaGGUGCUucGGUg -3'
miRNA:   3'- caGUGgCGCG-------UCGUGCG-CCAUGA--CCG- -5'
18280 3' -58.6 NC_004681.1 + 19815 0.66 0.591467
Target:  5'- -gUACCGCGU-GCuGCGCGGUGaccccGGCu -3'
miRNA:   3'- caGUGGCGCGuCG-UGCGCCAUga---CCG- -5'
18280 3' -58.6 NC_004681.1 + 28268 0.66 0.644198
Target:  5'- cGUCACCuGCGuCAGUGC-CGGUGCc-GCu -3'
miRNA:   3'- -CAGUGG-CGC-GUCGUGcGCCAUGacCG- -5'
18280 3' -58.6 NC_004681.1 + 60206 0.66 0.601983
Target:  5'- -cCGCCGCGCGGggauCACGCc-UAgUGGCg -3'
miRNA:   3'- caGUGGCGCGUC----GUGCGccAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 27905 0.66 0.612521
Target:  5'- cUCGuCCaGUaGCGGCACGCGGggcCUcGGCg -3'
miRNA:   3'- cAGU-GG-CG-CGUCGUGCGCCau-GA-CCG- -5'
18280 3' -58.6 NC_004681.1 + 57403 0.66 0.612521
Target:  5'- cUCAgCGCGCuc--CGCGaUGCUGGCg -3'
miRNA:   3'- cAGUgGCGCGucguGCGCcAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 31225 0.66 0.623076
Target:  5'- aUCGCaGCGUGGCugGgGG-ACcGGCg -3'
miRNA:   3'- cAGUGgCGCGUCGugCgCCaUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 12996 0.66 0.644199
Target:  5'- -aCACCGC-UGGCAcCGCGGacgACgUGGCc -3'
miRNA:   3'- caGUGGCGcGUCGU-GCGCCa--UG-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.