miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 11219 0.68 0.509075
Target:  5'- -cCAgUGUGUGcGCACGCGGUGCgaauuccGGCa -3'
miRNA:   3'- caGUgGCGCGU-CGUGCGCCAUGa------CCG- -5'
18280 3' -58.6 NC_004681.1 + 2437 0.68 0.509075
Target:  5'- uGUUGgCGCGCGGCACGCaGaagugGGCg -3'
miRNA:   3'- -CAGUgGCGCGUCGUGCGcCauga-CCG- -5'
18280 3' -58.6 NC_004681.1 + 16153 0.67 0.529292
Target:  5'- aGUCugCGUuGCGGCggAUGCGGUGacagcGGCg -3'
miRNA:   3'- -CAGugGCG-CGUCG--UGCGCCAUga---CCG- -5'
18280 3' -58.6 NC_004681.1 + 20668 0.67 0.549796
Target:  5'- gGUCACCGCGgAGUucccacgcaAUGCGGUAgaGaccGCg -3'
miRNA:   3'- -CAGUGGCGCgUCG---------UGCGCCAUgaC---CG- -5'
18280 3' -58.6 NC_004681.1 + 46892 0.67 0.549796
Target:  5'- uUCACCGUcuucgggcucGCGGCGacUGGUucGCUGGCa -3'
miRNA:   3'- cAGUGGCG----------CGUCGUgcGCCA--UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 12682 0.67 0.560141
Target:  5'- -cCGCCGCGgAGCucaacCGUauGGagGCUGGCa -3'
miRNA:   3'- caGUGGCGCgUCGu----GCG--CCa-UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 49329 0.67 0.570539
Target:  5'- cUCACCGUccgccacgGCGGCGcCGCGGgcgcugaccACUGGg -3'
miRNA:   3'- cAGUGGCG--------CGUCGU-GCGCCa--------UGACCg -5'
18280 3' -58.6 NC_004681.1 + 34345 0.67 0.580984
Target:  5'- -aCGCCGCgGCGGCGUGagGGUugUGcGCg -3'
miRNA:   3'- caGUGGCG-CGUCGUGCg-CCAugAC-CG- -5'
18280 3' -58.6 NC_004681.1 + 24758 0.67 0.580984
Target:  5'- aUCACCacgaccCGCAGCGCaucGCGcucGCUGGCg -3'
miRNA:   3'- cAGUGGc-----GCGUCGUG---CGCca-UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 5878 0.67 0.580984
Target:  5'- uUCgACCGCGC-GCACGCuGGcuccucgaaUACcGGCa -3'
miRNA:   3'- cAG-UGGCGCGuCGUGCG-CC---------AUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 31987 0.67 0.580984
Target:  5'- -cCGCCGCGaGGUA-GUaGUACUGGCg -3'
miRNA:   3'- caGUGGCGCgUCGUgCGcCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 30877 0.66 0.591467
Target:  5'- aGUCAUgGCGCGGC-CGuUGGUGaccaGGCc -3'
miRNA:   3'- -CAGUGgCGCGUCGuGC-GCCAUga--CCG- -5'
18280 3' -58.6 NC_004681.1 + 19815 0.66 0.591467
Target:  5'- -gUACCGCGU-GCuGCGCGGUGaccccGGCu -3'
miRNA:   3'- caGUGGCGCGuCG-UGCGCCAUga---CCG- -5'
18280 3' -58.6 NC_004681.1 + 32423 0.66 0.591467
Target:  5'- -cCACCGCGCAgGCGgagcacauCGUGGgcaucGCUGaGCa -3'
miRNA:   3'- caGUGGCGCGU-CGU--------GCGCCa----UGAC-CG- -5'
18280 3' -58.6 NC_004681.1 + 6678 0.66 0.600929
Target:  5'- -cCAUgGCGCccuugacGGCGCGCaGGUGCUucGGUg -3'
miRNA:   3'- caGUGgCGCG-------UCGUGCG-CCAUGA--CCG- -5'
18280 3' -58.6 NC_004681.1 + 12308 0.66 0.601982
Target:  5'- -cCACCGgggaUGCGGCGCGCGGggaagcccgACgccgGGUc -3'
miRNA:   3'- caGUGGC----GCGUCGUGCGCCa--------UGa---CCG- -5'
18280 3' -58.6 NC_004681.1 + 42975 0.66 0.601982
Target:  5'- cUCGgugUCGCGCAgGCACGCGcUGCaGGUg -3'
miRNA:   3'- cAGU---GGCGCGU-CGUGCGCcAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 74614 0.66 0.601982
Target:  5'- -gCACUGUGC-GCACGCu---CUGGCg -3'
miRNA:   3'- caGUGGCGCGuCGUGCGccauGACCG- -5'
18280 3' -58.6 NC_004681.1 + 47234 0.66 0.601982
Target:  5'- --aACuCGCGCAGUucgGCGCGGccCUcGGCg -3'
miRNA:   3'- cagUG-GCGCGUCG---UGCGCCauGA-CCG- -5'
18280 3' -58.6 NC_004681.1 + 60206 0.66 0.601983
Target:  5'- -cCGCCGCGCGGggauCACGCc-UAgUGGCg -3'
miRNA:   3'- caGUGGCGCGUC----GUGCGccAUgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.