miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 42463 0.7 0.378715
Target:  5'- -aCGCCuccgauGCGCGGCACuuGCGGcUGgUGGCa -3'
miRNA:   3'- caGUGG------CGCGUCGUG--CGCC-AUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 41677 0.68 0.479385
Target:  5'- aUCGCCGUGCGcuGCcUGCGGgg-UGGCg -3'
miRNA:   3'- cAGUGGCGCGU--CGuGCGCCaugACCG- -5'
18280 3' -58.6 NC_004681.1 + 40485 0.7 0.361991
Target:  5'- -aCACCG-GCcacGCugGCGGUgccgcucuuGCUGGCg -3'
miRNA:   3'- caGUGGCgCGu--CGugCGCCA---------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 39930 0.74 0.235113
Target:  5'- --gGgCGCGguGCGCGCGGUGC-GGUc -3'
miRNA:   3'- cagUgGCGCguCGUGCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 39453 0.68 0.509075
Target:  5'- -gCACCG-GCuGCGacacaccucCGCGGUgcGCUGGCu -3'
miRNA:   3'- caGUGGCgCGuCGU---------GCGCCA--UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 39235 0.69 0.460071
Target:  5'- cUCACCGUGC-GC-CGCGGcaagGGCg -3'
miRNA:   3'- cAGUGGCGCGuCGuGCGCCaugaCCG- -5'
18280 3' -58.6 NC_004681.1 + 34434 0.68 0.499089
Target:  5'- -aCGCCGcCGCGGCGuaagacuuCG-GGUGCUGGg -3'
miRNA:   3'- caGUGGC-GCGUCGU--------GCgCCAUGACCg -5'
18280 3' -58.6 NC_004681.1 + 34345 0.67 0.580984
Target:  5'- -aCGCCGCgGCGGCGUGagGGUugUGcGCg -3'
miRNA:   3'- caGUGGCG-CGUCGUGCg-CCAugAC-CG- -5'
18280 3' -58.6 NC_004681.1 + 33374 0.69 0.460071
Target:  5'- --gGCCGCGUcGCGCGCGccGUG-UGGCa -3'
miRNA:   3'- cagUGGCGCGuCGUGCGC--CAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 33306 0.68 0.505071
Target:  5'- -gCGCCGCGguGUACGcCGGgACguucgccguccagGGCa -3'
miRNA:   3'- caGUGGCGCguCGUGC-GCCaUGa------------CCG- -5'
18280 3' -58.6 NC_004681.1 + 32698 0.71 0.354634
Target:  5'- -aCGUCGCGCGGCugGUGGaugaggaccucuuccGCUGGCa -3'
miRNA:   3'- caGUGGCGCGUCGugCGCCa--------------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 32423 0.66 0.591467
Target:  5'- -cCACCGCGCAgGCGgagcacauCGUGGgcaucGCUGaGCa -3'
miRNA:   3'- caGUGGCGCGU-CGU--------GCGCCa----UGAC-CG- -5'
18280 3' -58.6 NC_004681.1 + 32104 0.66 0.644198
Target:  5'- -aCACC-CGCGGCGCcgaucaGCGaGccgaUGCUGGCg -3'
miRNA:   3'- caGUGGcGCGUCGUG------CGC-C----AUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 31987 0.67 0.580984
Target:  5'- -cCGCCGCGaGGUA-GUaGUACUGGCg -3'
miRNA:   3'- caGUGGCGCgUCGUgCGcCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 31881 0.66 0.644198
Target:  5'- gGUCAgCaGUGcCAGCGCGCGGUcuucuuGCcGGUc -3'
miRNA:   3'- -CAGUgG-CGC-GUCGUGCGCCA------UGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 31225 0.66 0.623076
Target:  5'- aUCGCaGCGUGGCugGgGG-ACcGGCg -3'
miRNA:   3'- cAGUGgCGCGUCGugCgCCaUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 30877 0.66 0.591467
Target:  5'- aGUCAUgGCGCGGC-CGuUGGUGaccaGGCc -3'
miRNA:   3'- -CAGUGgCGCGUCGuGC-GCCAUga--CCG- -5'
18280 3' -58.6 NC_004681.1 + 29408 0.75 0.196859
Target:  5'- -cCACCGCGUGGuCugGCGucACUGGCg -3'
miRNA:   3'- caGUGGCGCGUC-GugCGCcaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 29190 0.69 0.423641
Target:  5'- cGUUACCGCGCcguuaauccuguuauGCGCGUGGU--UGGUc -3'
miRNA:   3'- -CAGUGGCGCGu--------------CGUGCGCCAugACCG- -5'
18280 3' -58.6 NC_004681.1 + 28268 0.66 0.644198
Target:  5'- cGUCACCuGCGuCAGUGC-CGGUGCc-GCu -3'
miRNA:   3'- -CAGUGG-CGC-GUCGUGcGCCAUGacCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.