miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 27905 0.66 0.612521
Target:  5'- cUCGuCCaGUaGCGGCACGCGGggcCUcGGCg -3'
miRNA:   3'- cAGU-GG-CG-CGUCGUGCGCCau-GA-CCG- -5'
18280 3' -58.6 NC_004681.1 + 27666 0.7 0.361991
Target:  5'- gGUUACCGauacgGCGGCG-GCGGUGgUGGUg -3'
miRNA:   3'- -CAGUGGCg----CGUCGUgCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 26332 0.68 0.499089
Target:  5'- -cCACCGCGUAGgGgGCGGgcaucGCcgccgUGGCg -3'
miRNA:   3'- caGUGGCGCGUCgUgCGCCa----UG-----ACCG- -5'
18280 3' -58.6 NC_004681.1 + 25814 0.69 0.460071
Target:  5'- uUCACCGC-CA-C-CGCGGUGCUcauGGCa -3'
miRNA:   3'- cAGUGGCGcGUcGuGCGCCAUGA---CCG- -5'
18280 3' -58.6 NC_004681.1 + 24758 0.67 0.580984
Target:  5'- aUCACCacgaccCGCAGCGCaucGCGcucGCUGGCg -3'
miRNA:   3'- cAGUGGc-----GCGUCGUG---CGCca-UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 23933 0.7 0.370289
Target:  5'- -aCGCUGCGCGGCGC-CGG-AUcGGCg -3'
miRNA:   3'- caGUGGCGCGUCGUGcGCCaUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 20668 0.67 0.549796
Target:  5'- gGUCACCGCGgAGUucccacgcaAUGCGGUAgaGaccGCg -3'
miRNA:   3'- -CAGUGGCGCgUCG---------UGCGCCAUgaC---CG- -5'
18280 3' -58.6 NC_004681.1 + 20263 0.72 0.31422
Target:  5'- aUCACCgaGCGCAGCcggggcaGCGUGGUGagcaugacgacCUGGCc -3'
miRNA:   3'- cAGUGG--CGCGUCG-------UGCGCCAU-----------GACCG- -5'
18280 3' -58.6 NC_004681.1 + 19912 1.11 0.00047
Target:  5'- gGUCACCGCGCAGCACGCGGUACUGGCg -3'
miRNA:   3'- -CAGUGGCGCGUCGUGCGCCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 19815 0.66 0.591467
Target:  5'- -gUACCGCGU-GCuGCGCGGUGaccccGGCu -3'
miRNA:   3'- caGUGGCGCGuCG-UGCGCCAUga---CCG- -5'
18280 3' -58.6 NC_004681.1 + 17582 0.71 0.32247
Target:  5'- -aCGCCGCGgccaAGCGcCGUGGUAUcGGCg -3'
miRNA:   3'- caGUGGCGCg---UCGU-GCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 17428 0.66 0.62202
Target:  5'- gGUCGCCGCGCugauccugcguguAGCGuccCGCGGgcacGCgcgccagcagGGCg -3'
miRNA:   3'- -CAGUGGCGCG-------------UCGU---GCGCCa---UGa---------CCG- -5'
18280 3' -58.6 NC_004681.1 + 16586 0.66 0.633638
Target:  5'- aGUUGCCgggGCGCGGCGCcgaguaguccGUGGgggGCUGGa -3'
miRNA:   3'- -CAGUGG---CGCGUCGUG----------CGCCa--UGACCg -5'
18280 3' -58.6 NC_004681.1 + 16153 0.67 0.529292
Target:  5'- aGUCugCGUuGCGGCggAUGCGGUGacagcGGCg -3'
miRNA:   3'- -CAGugGCG-CGUCG--UGCGCCAUga---CCG- -5'
18280 3' -58.6 NC_004681.1 + 14483 0.75 0.19186
Target:  5'- -cCGCCGaGCAGgGCGCgcugguggccGGUGCUGGCg -3'
miRNA:   3'- caGUGGCgCGUCgUGCG----------CCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 13136 0.69 0.42273
Target:  5'- -cCACCGCccuucGUGGCACgGCgGGUACgGGCg -3'
miRNA:   3'- caGUGGCG-----CGUCGUG-CG-CCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 13094 0.66 0.623076
Target:  5'- cGUCGuCCGCGguGC-CaGCGGUguaGCcGGUg -3'
miRNA:   3'- -CAGU-GGCGCguCGuG-CGCCA---UGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 12996 0.66 0.644199
Target:  5'- -aCACCGC-UGGCAcCGCGGacgACgUGGCc -3'
miRNA:   3'- caGUGGCGcGUCGU-GCGCCa--UG-ACCG- -5'
18280 3' -58.6 NC_004681.1 + 12682 0.67 0.560141
Target:  5'- -cCGCCGCGgAGCucaacCGUauGGagGCUGGCa -3'
miRNA:   3'- caGUGGCGCgUCGu----GCG--CCa-UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 12504 0.7 0.403869
Target:  5'- cGUCACCggcucaccgacgaGCGUcGC-CGCGGUGgUGGUg -3'
miRNA:   3'- -CAGUGG-------------CGCGuCGuGCGCCAUgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.