miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 2437 0.68 0.509075
Target:  5'- uGUUGgCGCGCGGCACGCaGaagugGGCg -3'
miRNA:   3'- -CAGUgGCGCGUCGUGCGcCauga-CCG- -5'
18280 3' -58.6 NC_004681.1 + 11219 0.68 0.509075
Target:  5'- -cCAgUGUGUGcGCACGCGGUGCgaauuccGGCa -3'
miRNA:   3'- caGUgGCGCGU-CGUGCGCCAUGa------CCG- -5'
18280 3' -58.6 NC_004681.1 + 16153 0.67 0.529292
Target:  5'- aGUCugCGUuGCGGCggAUGCGGUGacagcGGCg -3'
miRNA:   3'- -CAGugGCG-CGUCG--UGCGCCAUga---CCG- -5'
18280 3' -58.6 NC_004681.1 + 31987 0.67 0.580984
Target:  5'- -cCGCCGCGaGGUA-GUaGUACUGGCg -3'
miRNA:   3'- caGUGGCGCgUCGUgCGcCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 30877 0.66 0.591467
Target:  5'- aGUCAUgGCGCGGC-CGuUGGUGaccaGGCc -3'
miRNA:   3'- -CAGUGgCGCGUCGuGC-GCCAUga--CCG- -5'
18280 3' -58.6 NC_004681.1 + 6678 0.66 0.600929
Target:  5'- -cCAUgGCGCccuugacGGCGCGCaGGUGCUucGGUg -3'
miRNA:   3'- caGUGgCGCG-------UCGUGCG-CCAUGA--CCG- -5'
18280 3' -58.6 NC_004681.1 + 47234 0.66 0.601982
Target:  5'- --aACuCGCGCAGUucgGCGCGGccCUcGGCg -3'
miRNA:   3'- cagUG-GCGCGUCG---UGCGCCauGA-CCG- -5'
18280 3' -58.6 NC_004681.1 + 67051 0.69 0.46007
Target:  5'- uGUCGCCuucgaGCuCGGCGCGCGGcACcagGGCc -3'
miRNA:   3'- -CAGUGG-----CGcGUCGUGCGCCaUGa--CCG- -5'
18280 3' -58.6 NC_004681.1 + 64936 0.69 0.431896
Target:  5'- gGUCGCgGCGCAGguaccaguccCACGgGGUGCccucggaGGCg -3'
miRNA:   3'- -CAGUGgCGCGUC----------GUGCgCCAUGa------CCG- -5'
18280 3' -58.6 NC_004681.1 + 29190 0.69 0.423641
Target:  5'- cGUUACCGCGCcguuaauccuguuauGCGCGUGGU--UGGUc -3'
miRNA:   3'- -CAGUGGCGCGu--------------CGUGCGCCAugACCG- -5'
18280 3' -58.6 NC_004681.1 + 52978 0.77 0.140094
Target:  5'- uGUCGCCGCgGCucgGGCACGCGGgcagGCcgaUGGCc -3'
miRNA:   3'- -CAGUGGCG-CG---UCGUGCGCCa---UG---ACCG- -5'
18280 3' -58.6 NC_004681.1 + 39930 0.74 0.235113
Target:  5'- --gGgCGCGguGCGCGCGGUGC-GGUc -3'
miRNA:   3'- cagUgGCGCguCGUGCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 57902 0.73 0.241061
Target:  5'- uUCGCCaccucggcgGCGCGGCGCGUGGUcgcggucuccGgUGGCg -3'
miRNA:   3'- cAGUGG---------CGCGUCGUGCGCCA----------UgACCG- -5'
18280 3' -58.6 NC_004681.1 + 20263 0.72 0.31422
Target:  5'- aUCACCgaGCGCAGCcggggcaGCGUGGUGagcaugacgacCUGGCc -3'
miRNA:   3'- cAGUGG--CGCGUCG-------UGCGCCAU-----------GACCG- -5'
18280 3' -58.6 NC_004681.1 + 40485 0.7 0.361991
Target:  5'- -aCACCG-GCcacGCugGCGGUgccgcucuuGCUGGCg -3'
miRNA:   3'- caGUGGCgCGu--CGugCGCCA---------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 42463 0.7 0.378715
Target:  5'- -aCGCCuccgauGCGCGGCACuuGCGGcUGgUGGCa -3'
miRNA:   3'- caGUGG------CGCGUCGUG--CGCC-AUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 70191 0.7 0.378715
Target:  5'- ---cCCGUGU-GCGCGCGGUcucugaugccuACUGGCa -3'
miRNA:   3'- caguGGCGCGuCGUGCGCCA-----------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 2934 0.7 0.387269
Target:  5'- gGUgACCGUGUAGCG-GCGGUccccGCgGGCu -3'
miRNA:   3'- -CAgUGGCGCGUCGUgCGCCA----UGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 12504 0.7 0.403869
Target:  5'- cGUCACCggcucaccgacgaGCGUcGC-CGCGGUGgUGGUg -3'
miRNA:   3'- -CAGUGG-------------CGCGuCGuGCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 61857 0.69 0.42273
Target:  5'- --gGCCGaugGCGGC-CGCGGU-CUGGUg -3'
miRNA:   3'- cagUGGCg--CGUCGuGCGCCAuGACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.