miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 57118 0.68 0.48919
Target:  5'- gGUCAauGagaGCGGCuacCGCGGUACcGGCu -3'
miRNA:   3'- -CAGUggCg--CGUCGu--GCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 2934 0.7 0.387269
Target:  5'- gGUgACCGUGUAGCG-GCGGUccccGCgGGCu -3'
miRNA:   3'- -CAgUGGCGCGUCGUgCGCCA----UGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 56854 0.66 0.644198
Target:  5'- cUCGCCcCGCGGCACGUcguaGGUGuagcccuuCUGGa -3'
miRNA:   3'- cAGUGGcGCGUCGUGCG----CCAU--------GACCg -5'
18280 3' -58.6 NC_004681.1 + 12308 0.66 0.601982
Target:  5'- -cCACCGgggaUGCGGCGCGCGGggaagcccgACgccgGGUc -3'
miRNA:   3'- caGUGGC----GCGUCGUGCGCCa--------UGa---CCG- -5'
18280 3' -58.6 NC_004681.1 + 11219 0.68 0.509075
Target:  5'- -cCAgUGUGUGcGCACGCGGUGCgaauuccGGCa -3'
miRNA:   3'- caGUgGCGCGU-CGUGCGCCAUGa------CCG- -5'
18280 3' -58.6 NC_004681.1 + 70191 0.7 0.378715
Target:  5'- ---cCCGUGU-GCGCGCGGUcucugaugccuACUGGCa -3'
miRNA:   3'- caguGGCGCGuCGUGCGCCA-----------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 42975 0.66 0.601982
Target:  5'- cUCGgugUCGCGCAgGCACGCGcUGCaGGUg -3'
miRNA:   3'- cAGU---GGCGCGU-CGUGCGCcAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 42463 0.7 0.378715
Target:  5'- -aCGCCuccgauGCGCGGCACuuGCGGcUGgUGGCa -3'
miRNA:   3'- caGUGG------CGCGUCGUG--CGCC-AUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 40485 0.7 0.361991
Target:  5'- -aCACCG-GCcacGCugGCGGUgccgcucuuGCUGGCg -3'
miRNA:   3'- caGUGGCgCGu--CGugCGCCA---------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 16153 0.67 0.529292
Target:  5'- aGUCugCGUuGCGGCggAUGCGGUGacagcGGCg -3'
miRNA:   3'- -CAGugGCG-CGUCG--UGCGCCAUga---CCG- -5'
18280 3' -58.6 NC_004681.1 + 32104 0.66 0.644198
Target:  5'- -aCACC-CGCGGCGCcgaucaGCGaGccgaUGCUGGCg -3'
miRNA:   3'- caGUGGcGCGUCGUG------CGC-C----AUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 26332 0.68 0.499089
Target:  5'- -cCACCGCGUAGgGgGCGGgcaucGCcgccgUGGCg -3'
miRNA:   3'- caGUGGCGCGUCgUgCGCCa----UG-----ACCG- -5'
18280 3' -58.6 NC_004681.1 + 6678 0.66 0.600929
Target:  5'- -cCAUgGCGCccuugacGGCGCGCaGGUGCUucGGUg -3'
miRNA:   3'- caGUGgCGCG-------UCGUGCG-CCAUGA--CCG- -5'
18280 3' -58.6 NC_004681.1 + 17428 0.66 0.62202
Target:  5'- gGUCGCCGCGCugauccugcguguAGCGuccCGCGGgcacGCgcgccagcagGGCg -3'
miRNA:   3'- -CAGUGGCGCG-------------UCGU---GCGCCa---UGa---------CCG- -5'
18280 3' -58.6 NC_004681.1 + 10330 0.66 0.633638
Target:  5'- gGUCACC-CGCAGCGaacCGgGGaGCcagGGCc -3'
miRNA:   3'- -CAGUGGcGCGUCGU---GCgCCaUGa--CCG- -5'
18280 3' -58.6 NC_004681.1 + 64936 0.69 0.431896
Target:  5'- gGUCGCgGCGCAGguaccaguccCACGgGGUGCccucggaGGCg -3'
miRNA:   3'- -CAGUGgCGCGUC----------GUGCgCCAUGa------CCG- -5'
18280 3' -58.6 NC_004681.1 + 12504 0.7 0.403869
Target:  5'- cGUCACCggcucaccgacgaGCGUcGC-CGCGGUGgUGGUg -3'
miRNA:   3'- -CAGUGG-------------CGCGuCGuGCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 13136 0.69 0.42273
Target:  5'- -cCACCGCccuucGUGGCACgGCgGGUACgGGCg -3'
miRNA:   3'- caGUGGCG-----CGUCGUG-CG-CCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 32423 0.66 0.591467
Target:  5'- -cCACCGCGCAgGCGgagcacauCGUGGgcaucGCUGaGCa -3'
miRNA:   3'- caGUGGCGCGU-CGU--------GCGCCa----UGAC-CG- -5'
18280 3' -58.6 NC_004681.1 + 34345 0.67 0.580984
Target:  5'- -aCGCCGCgGCGGCGUGagGGUugUGcGCg -3'
miRNA:   3'- caGUGGCG-CGUCGUGCg-CCAugAC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.