miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 5878 0.67 0.580984
Target:  5'- uUCgACCGCGC-GCACGCuGGcuccucgaaUACcGGCa -3'
miRNA:   3'- cAG-UGGCGCGuCGUGCG-CC---------AUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 19815 0.66 0.591467
Target:  5'- -gUACCGCGU-GCuGCGCGGUGaccccGGCu -3'
miRNA:   3'- caGUGGCGCGuCG-UGCGCCAUga---CCG- -5'
18280 3' -58.6 NC_004681.1 + 17582 0.71 0.32247
Target:  5'- -aCGCCGCGgccaAGCGcCGUGGUAUcGGCg -3'
miRNA:   3'- caGUGGCGCg---UCGU-GCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 57804 0.72 0.279416
Target:  5'- -gCGCCGCGCcgccgagguGGCGaaggaGCGGgGCUGGCc -3'
miRNA:   3'- caGUGGCGCG---------UCGUg----CGCCaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 6678 0.74 0.223586
Target:  5'- cUCGCCGUGCAGCuCGC---ACUGGCc -3'
miRNA:   3'- cAGUGGCGCGUCGuGCGccaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 24758 0.67 0.580984
Target:  5'- aUCACCacgaccCGCAGCGCaucGCGcucGCUGGCg -3'
miRNA:   3'- cAGUGGc-----GCGUCGUG---CGCca-UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 29408 0.75 0.196859
Target:  5'- -cCACCGCGUGGuCugGCGucACUGGCg -3'
miRNA:   3'- caGUGGCGCGUC-GugCGCcaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 32423 0.66 0.591467
Target:  5'- -cCACCGCGCAgGCGgagcacauCGUGGgcaucGCUGaGCa -3'
miRNA:   3'- caGUGGCGCGU-CGU--------GCGCCa----UGAC-CG- -5'
18280 3' -58.6 NC_004681.1 + 27666 0.7 0.361991
Target:  5'- gGUUACCGauacgGCGGCG-GCGGUGgUGGUg -3'
miRNA:   3'- -CAGUGGCg----CGUCGUgCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 23933 0.7 0.370289
Target:  5'- -aCGCUGCGCGGCGC-CGG-AUcGGCg -3'
miRNA:   3'- caGUGGCGCGUCGUGcGCCaUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 46892 0.67 0.549796
Target:  5'- uUCACCGUcuucgggcucGCGGCGacUGGUucGCUGGCa -3'
miRNA:   3'- cAGUGGCG----------CGUCGUgcGCCA--UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 39453 0.68 0.509075
Target:  5'- -gCACCG-GCuGCGacacaccucCGCGGUgcGCUGGCu -3'
miRNA:   3'- caGUGGCgCGuCGU---------GCGCCA--UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 33306 0.68 0.505071
Target:  5'- -gCGCCGCGguGUACGcCGGgACguucgccguccagGGCa -3'
miRNA:   3'- caGUGGCGCguCGUGC-GCCaUGa------------CCG- -5'
18280 3' -58.6 NC_004681.1 + 33374 0.69 0.460071
Target:  5'- --gGCCGCGUcGCGCGCGccGUG-UGGCa -3'
miRNA:   3'- cagUGGCGCGuCGUGCGC--CAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 39235 0.69 0.460071
Target:  5'- cUCACCGUGC-GC-CGCGGcaagGGCg -3'
miRNA:   3'- cAGUGGCGCGuCGuGCGCCaugaCCG- -5'
18280 3' -58.6 NC_004681.1 + 12996 0.66 0.644199
Target:  5'- -aCACCGC-UGGCAcCGCGGacgACgUGGCc -3'
miRNA:   3'- caGUGGCGcGUCGU-GCGCCa--UG-ACCG- -5'
18280 3' -58.6 NC_004681.1 + 12682 0.67 0.560141
Target:  5'- -cCGCCGCGgAGCucaacCGUauGGagGCUGGCa -3'
miRNA:   3'- caGUGGCGCgUCGu----GCG--CCa-UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 13136 0.69 0.42273
Target:  5'- -cCACCGCccuucGUGGCACgGCgGGUACgGGCg -3'
miRNA:   3'- caGUGGCG-----CGUCGUG-CG-CCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 63525 0.69 0.42273
Target:  5'- -aCAUCG-GCAaGCGCGCGGUAaUGGUu -3'
miRNA:   3'- caGUGGCgCGU-CGUGCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 5325 0.69 0.42273
Target:  5'- aGUCAUUGCcaAGCGCGCacaGGcGCUGGCa -3'
miRNA:   3'- -CAGUGGCGcgUCGUGCG---CCaUGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.