Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18280 | 3' | -58.6 | NC_004681.1 | + | 19815 | 0.66 | 0.591467 |
Target: 5'- -gUACCGCGU-GCuGCGCGGUGaccccGGCu -3' miRNA: 3'- caGUGGCGCGuCG-UGCGCCAUga---CCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 32423 | 0.66 | 0.591467 |
Target: 5'- -cCACCGCGCAgGCGgagcacauCGUGGgcaucGCUGaGCa -3' miRNA: 3'- caGUGGCGCGU-CGU--------GCGCCa----UGAC-CG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 34345 | 0.67 | 0.580984 |
Target: 5'- -aCGCCGCgGCGGCGUGagGGUugUGcGCg -3' miRNA: 3'- caGUGGCG-CGUCGUGCg-CCAugAC-CG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 24758 | 0.67 | 0.580984 |
Target: 5'- aUCACCacgaccCGCAGCGCaucGCGcucGCUGGCg -3' miRNA: 3'- cAGUGGc-----GCGUCGUG---CGCca-UGACCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 5878 | 0.67 | 0.580984 |
Target: 5'- uUCgACCGCGC-GCACGCuGGcuccucgaaUACcGGCa -3' miRNA: 3'- cAG-UGGCGCGuCGUGCG-CC---------AUGaCCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 31987 | 0.67 | 0.580984 |
Target: 5'- -cCGCCGCGaGGUA-GUaGUACUGGCg -3' miRNA: 3'- caGUGGCGCgUCGUgCGcCAUGACCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 49329 | 0.67 | 0.570539 |
Target: 5'- cUCACCGUccgccacgGCGGCGcCGCGGgcgcugaccACUGGg -3' miRNA: 3'- cAGUGGCG--------CGUCGU-GCGCCa--------UGACCg -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 12682 | 0.67 | 0.560141 |
Target: 5'- -cCGCCGCGgAGCucaacCGUauGGagGCUGGCa -3' miRNA: 3'- caGUGGCGCgUCGu----GCG--CCa-UGACCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 46892 | 0.67 | 0.549796 |
Target: 5'- uUCACCGUcuucgggcucGCGGCGacUGGUucGCUGGCa -3' miRNA: 3'- cAGUGGCG----------CGUCGUgcGCCA--UGACCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 20668 | 0.67 | 0.549796 |
Target: 5'- gGUCACCGCGgAGUucccacgcaAUGCGGUAgaGaccGCg -3' miRNA: 3'- -CAGUGGCGCgUCG---------UGCGCCAUgaC---CG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 16153 | 0.67 | 0.529292 |
Target: 5'- aGUCugCGUuGCGGCggAUGCGGUGacagcGGCg -3' miRNA: 3'- -CAGugGCG-CGUCG--UGCGCCAUga---CCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 39453 | 0.68 | 0.509075 |
Target: 5'- -gCACCG-GCuGCGacacaccucCGCGGUgcGCUGGCu -3' miRNA: 3'- caGUGGCgCGuCGU---------GCGCCA--UGACCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 11219 | 0.68 | 0.509075 |
Target: 5'- -cCAgUGUGUGcGCACGCGGUGCgaauuccGGCa -3' miRNA: 3'- caGUgGCGCGU-CGUGCGCCAUGa------CCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 2437 | 0.68 | 0.509075 |
Target: 5'- uGUUGgCGCGCGGCACGCaGaagugGGCg -3' miRNA: 3'- -CAGUgGCGCGUCGUGCGcCauga-CCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 33306 | 0.68 | 0.505071 |
Target: 5'- -gCGCCGCGguGUACGcCGGgACguucgccguccagGGCa -3' miRNA: 3'- caGUGGCGCguCGUGC-GCCaUGa------------CCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 34434 | 0.68 | 0.499089 |
Target: 5'- -aCGCCGcCGCGGCGuaagacuuCG-GGUGCUGGg -3' miRNA: 3'- caGUGGC-GCGUCGU--------GCgCCAUGACCg -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 26332 | 0.68 | 0.499089 |
Target: 5'- -cCACCGCGUAGgGgGCGGgcaucGCcgccgUGGCg -3' miRNA: 3'- caGUGGCGCGUCgUgCGCCa----UG-----ACCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 57118 | 0.68 | 0.48919 |
Target: 5'- gGUCAauGagaGCGGCuacCGCGGUACcGGCu -3' miRNA: 3'- -CAGUggCg--CGUCGu--GCGCCAUGaCCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 41677 | 0.68 | 0.479385 |
Target: 5'- aUCGCCGUGCGcuGCcUGCGGgg-UGGCg -3' miRNA: 3'- cAGUGGCGCGU--CGuGCGCCaugACCG- -5' |
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18280 | 3' | -58.6 | NC_004681.1 | + | 39235 | 0.69 | 0.460071 |
Target: 5'- cUCACCGUGC-GC-CGCGGcaagGGCg -3' miRNA: 3'- cAGUGGCGCGuCGuGCGCCaugaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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