Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18280 | 5' | -59.5 | NC_004681.1 | + | 44941 | 0.68 | 0.417965 |
Target: 5'- -cGGUGGAGCCGC-CACC-GCGagCu -3' miRNA: 3'- aaUCGCCUCGGCGuGUGGuCGCagGu -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 9626 | 0.68 | 0.417965 |
Target: 5'- -aGGCcgaGGGGCgGUACACCAGCaggCCGa -3' miRNA: 3'- aaUCG---CCUCGgCGUGUGGUCGca-GGU- -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 40550 | 0.68 | 0.399956 |
Target: 5'- -gAGUGGAGCCaCuCACCgAGCGUCg- -3' miRNA: 3'- aaUCGCCUCGGcGuGUGG-UCGCAGgu -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 37661 | 0.68 | 0.391138 |
Target: 5'- --uGCGGGGCCu--CGCCAGCGgCCGc -3' miRNA: 3'- aauCGCCUCGGcguGUGGUCGCaGGU- -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 22509 | 0.69 | 0.382449 |
Target: 5'- --uGCGGAggguuGCCGUccGCggccggggugACCAGCGUCCAc -3' miRNA: 3'- aauCGCCU-----CGGCG--UG----------UGGUCGCAGGU- -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 19520 | 0.69 | 0.373889 |
Target: 5'- ---uCGGuGCCGCagACGCCuGCGUCCu -3' miRNA: 3'- aaucGCCuCGGCG--UGUGGuCGCAGGu -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 27730 | 0.69 | 0.36546 |
Target: 5'- -cGGCGaccaGAGCCGCcgccgcCGCCAGCG-CCAc -3' miRNA: 3'- aaUCGC----CUCGGCGu-----GUGGUCGCaGGU- -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 22912 | 0.69 | 0.36546 |
Target: 5'- -aGGCGGGGUCGC-C-CCGGCGaugCCGu -3' miRNA: 3'- aaUCGCCUCGGCGuGuGGUCGCa--GGU- -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 849 | 0.69 | 0.349 |
Target: 5'- -gGGCGGcagggccggguaGGCCGU-CACCAGuCGUCCu -3' miRNA: 3'- aaUCGCC------------UCGGCGuGUGGUC-GCAGGu -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 25303 | 0.69 | 0.34097 |
Target: 5'- -aAGCGGucGCCGCcguUGCCAGCGccgCCAg -3' miRNA: 3'- aaUCGCCu-CGGCGu--GUGGUCGCa--GGU- -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 13492 | 0.7 | 0.302843 |
Target: 5'- --cGUGGAGCCGCACAagaucaaCGGCGUg-- -3' miRNA: 3'- aauCGCCUCGGCGUGUg------GUCGCAggu -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 892 | 0.71 | 0.268084 |
Target: 5'- -gAGCGGgaAGCCGC-C-CUGGCGUCCGc -3' miRNA: 3'- aaUCGCC--UCGGCGuGuGGUCGCAGGU- -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 17328 | 0.71 | 0.261532 |
Target: 5'- gUAGCcGuAGCCGUAucCGCCAGCGUUCAu -3' miRNA: 3'- aAUCGcC-UCGGCGU--GUGGUCGCAGGU- -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 14563 | 0.75 | 0.148084 |
Target: 5'- -cGGCGGAgGCgGCGCGCgCGGCGUUCGc -3' miRNA: 3'- aaUCGCCU-CGgCGUGUG-GUCGCAGGU- -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 7297 | 0.75 | 0.136641 |
Target: 5'- --uGCGacGAGCUGCACGCCAGCGacguUCCAc -3' miRNA: 3'- aauCGC--CUCGGCGUGUGGUCGC----AGGU- -5' |
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18280 | 5' | -59.5 | NC_004681.1 | + | 19878 | 1.05 | 0.00087 |
Target: 5'- cUUAGCGGAGCCGCACACCAGCGUCCAc -3' miRNA: 3'- -AAUCGCCUCGGCGUGUGGUCGCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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