Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18283 | 3' | -65.2 | NC_004681.1 | + | 62124 | 0.7 | 0.180666 |
Target: 5'- -gGACGGuCAGaGGUGuCCCACGgCCGCg -3' miRNA: 3'- uaCUGCCcGUC-CCGC-GGGUGC-GGCGg -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 565 | 0.7 | 0.17621 |
Target: 5'- aGUGACGgccgcauccccaGGCgaguuccuucAGGGCGCCaucgACGCCGUCg -3' miRNA: 3'- -UACUGC------------CCG----------UCCCGCGGg---UGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 30925 | 0.7 | 0.180666 |
Target: 5'- gAUGGgucCGGGCAGGuaGgCCCAgGCCGUg -3' miRNA: 3'- -UACU---GCCCGUCCcgC-GGGUgCGGCGg -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 16522 | 0.7 | 0.167591 |
Target: 5'- gAUGGCGGGUGGcGGCaacggucCCCACgGCgGCCg -3' miRNA: 3'- -UACUGCCCGUC-CCGc------GGGUG-CGgCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 44804 | 0.69 | 0.189877 |
Target: 5'- gGUGACGcGCuuGGuGCGCgUgACGCCGCCg -3' miRNA: 3'- -UACUGCcCGu-CC-CGCG-GgUGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 16714 | 0.69 | 0.184761 |
Target: 5'- uAUGACGGGCGGuGGCagcgaugGCaCCGucaaGCUGCCu -3' miRNA: 3'- -UACUGCCCGUC-CCG-------CG-GGUg---CGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 14449 | 0.69 | 0.199499 |
Target: 5'- --cGCGaGGCGGaGGCGaacgCCGCGCgCGCCg -3' miRNA: 3'- uacUGC-CCGUC-CCGCg---GGUGCG-GCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 14484 | 0.69 | 0.209543 |
Target: 5'- -cGcCGaGCAGGGCGCgCugGUgGCCg -3' miRNA: 3'- uaCuGCcCGUCCCGCGgGugCGgCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 51581 | 0.69 | 0.202966 |
Target: 5'- cUGGC-GGCAGcGGuCGCCCaguucgaugaggcgACGCUGCCu -3' miRNA: 3'- uACUGcCCGUC-CC-GCGGG--------------UGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 25238 | 0.69 | 0.209543 |
Target: 5'- -cGGCGGcCAuGGCGCCCGCGgCGgCg -3' miRNA: 3'- uaCUGCCcGUcCCGCGGGUGCgGCgG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 23462 | 0.69 | 0.196569 |
Target: 5'- -aGGCGGGCaGgagguugaccaccucGGGCGCCUgaaGCUGCCg -3' miRNA: 3'- uaCUGCCCG-U---------------CCCGCGGGug-CGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 16477 | 0.69 | 0.189877 |
Target: 5'- gGUGGcCGaGGCAacccacuuGGCGCCCuCGUCGCCa -3' miRNA: 3'- -UACU-GC-CCGUc-------CCGCGGGuGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 8894 | 0.69 | 0.199499 |
Target: 5'- gGUGAUGGuCAGGGCGUUgGCGaCCuuGCCg -3' miRNA: 3'- -UACUGCCcGUCCCGCGGgUGC-GG--CGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 7260 | 0.68 | 0.248173 |
Target: 5'- -cGACGcGGCcguccaccucGGCGCCgaguGCGCCGCCu -3' miRNA: 3'- uaCUGC-CCGuc--------CCGCGGg---UGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 62518 | 0.68 | 0.248173 |
Target: 5'- -cGGagaGGGCGGugucGGCGCCCA-GCCauGCCa -3' miRNA: 3'- uaCUg--CCCGUC----CCGCGGGUgCGG--CGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 50558 | 0.68 | 0.220019 |
Target: 5'- -cGGuCGGGguGGGCgucGCCCACGaCGUg -3' miRNA: 3'- uaCU-GCCCguCCCG---CGGGUGCgGCGg -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 16243 | 0.68 | 0.236569 |
Target: 5'- -cGACGGGau-GGcCGCCaGCGCCGCg -3' miRNA: 3'- uaCUGCCCgucCC-GCGGgUGCGGCGg -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 6457 | 0.68 | 0.230939 |
Target: 5'- ---uCGGGCGuGGCGCCCAaggGCUGCa -3' miRNA: 3'- uacuGCCCGUcCCGCGGGUg--CGGCGg -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 16132 | 0.68 | 0.225423 |
Target: 5'- gGUGACa-GCGGcGGCGCCCuuGCCagcaGCCg -3' miRNA: 3'- -UACUGccCGUC-CCGCGGGugCGG----CGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 39840 | 0.68 | 0.236569 |
Target: 5'- --cGCGcGCAccGCGCCCGCGCgCGCCa -3' miRNA: 3'- uacUGCcCGUccCGCGGGUGCG-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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