miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 55284 0.67 0.25415
Target:  5'- -aGAUGGGCAuuccgucgcGGGCGaUCCAUGgcuUCGCCg -3'
miRNA:   3'- uaCUGCCCGU---------CCCGC-GGGUGC---GGCGG- -5'
18283 3' -65.2 NC_004681.1 + 5702 0.67 0.25415
Target:  5'- cUGACGGGCuGGaGCGCggCC-UGUCGCUc -3'
miRNA:   3'- uACUGCCCGuCC-CGCG--GGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 3397 0.67 0.260244
Target:  5'- -aGAaguuGGCcGcGGCGCCCGCGCgaGCCa -3'
miRNA:   3'- uaCUgc--CCGuC-CCGCGGGUGCGg-CGG- -5'
18283 3' -65.2 NC_004681.1 + 59801 0.67 0.26458
Target:  5'- uUGGCaGGCcgcacucccagcagGGGGCGUggCgGCGCUGCCa -3'
miRNA:   3'- uACUGcCCG--------------UCCCGCG--GgUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 40736 0.67 0.26583
Target:  5'- cGUGGCGGaGUagcugggagAGGGCGgCCaccaucaACGUCGCCc -3'
miRNA:   3'- -UACUGCC-CG---------UCCCGCgGG-------UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 2606 0.67 0.272789
Target:  5'- -aGAUGGGUgacauccaagucGGGGauuaCGUUCACGCCGCg -3'
miRNA:   3'- uaCUGCCCG------------UCCC----GCGGGUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 63851 0.67 0.279241
Target:  5'- ---cCGGGC-GGGCcuuGCCuCGCGCCGUg -3'
miRNA:   3'- uacuGCCCGuCCCG---CGG-GUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 43758 0.67 0.279241
Target:  5'- -cGGCGGGCugaAGGGCGaggUACGaaGCCa -3'
miRNA:   3'- uaCUGCCCG---UCCCGCgg-GUGCggCGG- -5'
18283 3' -65.2 NC_004681.1 + 27687 0.67 0.279241
Target:  5'- -gGugGuGGUGGuGGCGCCUACGuuaaCCGCa -3'
miRNA:   3'- uaCugC-CCGUC-CCGCGGGUGC----GGCGg -5'
18283 3' -65.2 NC_004681.1 + 17397 0.67 0.285152
Target:  5'- --cGCGGGCAcgcgcgccagcaGGGCGUcgucuccgggauaCC-CGCCGCCc -3'
miRNA:   3'- uacUGCCCGU------------CCCGCG-------------GGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 53359 0.67 0.292509
Target:  5'- ---cCGGG-AGGGCuauacCCUugGCCGCCu -3'
miRNA:   3'- uacuGCCCgUCCCGc----GGGugCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 12296 0.66 0.299326
Target:  5'- -cGGCGcGCGGGGaaGCCCgACGCCGgguCCg -3'
miRNA:   3'- uaCUGCcCGUCCCg-CGGG-UGCGGC---GG- -5'
18283 3' -65.2 NC_004681.1 + 65216 0.66 0.306265
Target:  5'- uGUGGCGGccguacuuCAGGGCGCCUuccaucauUGCCagGCCg -3'
miRNA:   3'- -UACUGCCc-------GUCCCGCGGGu-------GCGG--CGG- -5'
18283 3' -65.2 NC_004681.1 + 7317 0.66 0.306265
Target:  5'- -cGACGuuccacccccGGCacccGGGGCuGaCCC-CGCCGCCg -3'
miRNA:   3'- uaCUGC----------CCG----UCCCG-C-GGGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16026 0.66 0.306265
Target:  5'- -cGGCugcuGGCaAGGGCGCCgC-CGCUGUCa -3'
miRNA:   3'- uaCUGc---CCG-UCCCGCGG-GuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 14649 0.66 0.306265
Target:  5'- -cGugGuGGCGGuGGCGgCgAUGCCGaCCc -3'
miRNA:   3'- uaCugC-CCGUC-CCGCgGgUGCGGC-GG- -5'
18283 3' -65.2 NC_004681.1 + 18208 0.66 0.306265
Target:  5'- gGUGcCuGGCcgGGGGCGCCgAUGCCggggauGCCg -3'
miRNA:   3'- -UACuGcCCG--UCCCGCGGgUGCGG------CGG- -5'
18283 3' -65.2 NC_004681.1 + 68619 0.66 0.306265
Target:  5'- --cACcGGCAuGGCGCCCAgGCgUGCCg -3'
miRNA:   3'- uacUGcCCGUcCCGCGGGUgCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 67209 0.66 0.313327
Target:  5'- -cGugGuGGUcucauucGGGCcguaGCCCACGuuGCCg -3'
miRNA:   3'- uaCugC-CCGu------CCCG----CGGGUGCggCGG- -5'
18283 3' -65.2 NC_004681.1 + 59649 0.66 0.313327
Target:  5'- --aGCGGGCGuccgaagcgguGGGCuuccaGCCaacauggcaGCGCCGCCa -3'
miRNA:   3'- uacUGCCCGU-----------CCCG-----CGGg--------UGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.