Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18283 | 3' | -65.2 | NC_004681.1 | + | 25173 | 0.72 | 0.129943 |
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Target: 5'- -cGAgGaGGCugagcgAGGuGcCGCCCGCGCCGCCc -3' miRNA: 3'- uaCUgC-CCG------UCC-C-GCGGGUGCGGCGG- -5' |
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| 18283 | 3' | -65.2 | NC_004681.1 | + | 60536 | 0.72 | 0.120267 |
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Target: 5'- -aGACGGGCcgaAGGGUagUCACGCCGCa -3' miRNA: 3'- uaCUGCCCG---UCCCGcgGGUGCGGCGg -5' |
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| 18283 | 3' | -65.2 | NC_004681.1 | + | 27621 | 0.72 | 0.114194 |
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Target: 5'- gGUGGCGcuggcGGCGGcGGCgGCUCugGUCGCCg -3' miRNA: 3'- -UACUGC-----CCGUC-CCG-CGGGugCGGCGG- -5' |
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| 18283 | 3' | -65.2 | NC_004681.1 | + | 13610 | 0.73 | 0.111265 |
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Target: 5'- -cGGCGGG-AGGGCaCuCCACGCCGUUg -3' miRNA: 3'- uaCUGCCCgUCCCGcG-GGUGCGGCGG- -5' |
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| 18283 | 3' | -65.2 | NC_004681.1 | + | 24957 | 0.74 | 0.081217 |
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Target: 5'- gGUGAgGGaGCcuuGGcGGCcgccGCCCGCGCCGCCg -3' miRNA: 3'- -UACUgCC-CG---UC-CCG----CGGGUGCGGCGG- -5' |
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| 18283 | 3' | -65.2 | NC_004681.1 | + | 59009 | 0.75 | 0.075013 |
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Target: 5'- -cGugGGGgAGGGCGCCCA--CCGCg -3' miRNA: 3'- uaCugCCCgUCCCGCGGGUgcGGCGg -5' |
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| 18283 | 3' | -65.2 | NC_004681.1 | + | 14872 | 0.76 | 0.063941 |
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Target: 5'- -gGAUGGcCAGGGCGUCCGCGgCGUCa -3' miRNA: 3'- uaCUGCCcGUCCCGCGGGUGCgGCGG- -5' |
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| 18283 | 3' | -65.2 | NC_004681.1 | + | 39353 | 0.76 | 0.060614 |
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Target: 5'- uUGACGcGGCGGcccuuGGCGCCCuuGCCGCg -3' miRNA: 3'- uACUGC-CCGUC-----CCGCGGGugCGGCGg -5' |
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| 18283 | 3' | -65.2 | NC_004681.1 | + | 45365 | 0.78 | 0.040492 |
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Target: 5'- --cACGGGCGGGGCGUCCgguGCUGCCa -3' miRNA: 3'- uacUGCCCGUCCCGCGGGug-CGGCGG- -5' |
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| 18283 | 3' | -65.2 | NC_004681.1 | + | 22381 | 1.09 | 0.00017 |
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Target: 5'- cAUGACGGGCAGGGCGCCCACGCCGCCa -3' miRNA: 3'- -UACUGCCCGUCCCGCGGGUGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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