miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 30925 0.7 0.180666
Target:  5'- gAUGGgucCGGGCAGGuaGgCCCAgGCCGUg -3'
miRNA:   3'- -UACU---GCCCGUCCcgC-GGGUgCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 33433 0.7 0.163425
Target:  5'- gAUGuGCGGGC-GGGUGCCCugGaCgGCg -3'
miRNA:   3'- -UAC-UGCCCGuCCCGCGGGugC-GgCGg -5'
18283 3' -65.2 NC_004681.1 + 34712 0.66 0.335247
Target:  5'- gGUG-CGGGCuuGGGaauuCCCGCgcgcuucgGCCGCCg -3'
miRNA:   3'- -UACuGCCCGu-CCCgc--GGGUG--------CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 39244 0.7 0.159352
Target:  5'- -cGcCGcGGCaAGGGCGCCaaggGCCGCCg -3'
miRNA:   3'- uaCuGC-CCG-UCCCGCGGgug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 39353 0.76 0.060614
Target:  5'- uUGACGcGGCGGcccuuGGCGCCCuuGCCGCg -3'
miRNA:   3'- uACUGC-CCGUC-----CCGCGGGugCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 39840 0.68 0.236569
Target:  5'- --cGCGcGCAccGCGCCCGCGCgCGCCa -3'
miRNA:   3'- uacUGCcCGUccCGCGGGUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 40736 0.67 0.26583
Target:  5'- cGUGGCGGaGUagcugggagAGGGCGgCCaccaucaACGUCGCCc -3'
miRNA:   3'- -UACUGCC-CG---------UCCCGCgGG-------UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 43758 0.67 0.279241
Target:  5'- -cGGCGGGCugaAGGGCGaggUACGaaGCCa -3'
miRNA:   3'- uaCUGCCCG---UCCCGCgg-GUGCggCGG- -5'
18283 3' -65.2 NC_004681.1 + 44804 0.69 0.189877
Target:  5'- gGUGACGcGCuuGGuGCGCgUgACGCCGCCg -3'
miRNA:   3'- -UACUGCcCGu-CC-CGCG-GgUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 45365 0.78 0.040492
Target:  5'- --cACGGGCGGGGCGUCCgguGCUGCCa -3'
miRNA:   3'- uacUGCCCGUCCCGCGGGug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 50558 0.68 0.220019
Target:  5'- -cGGuCGGGguGGGCgucGCCCACGaCGUg -3'
miRNA:   3'- uaCU-GCCCguCCCG---CGGGUGCgGCGg -5'
18283 3' -65.2 NC_004681.1 + 51581 0.69 0.202966
Target:  5'- cUGGC-GGCAGcGGuCGCCCaguucgaugaggcgACGCUGCCu -3'
miRNA:   3'- uACUGcCCGUC-CC-GCGGG--------------UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 53359 0.67 0.292509
Target:  5'- ---cCGGG-AGGGCuauacCCUugGCCGCCu -3'
miRNA:   3'- uacuGCCCgUCCCGc----GGGugCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 55284 0.67 0.25415
Target:  5'- -aGAUGGGCAuuccgucgcGGGCGaUCCAUGgcuUCGCCg -3'
miRNA:   3'- uaCUGCCCGU---------CCCGC-GGGUGC---GGCGG- -5'
18283 3' -65.2 NC_004681.1 + 56819 0.66 0.335247
Target:  5'- -gGAUGGGCugaccaucGGGUGUCCAgccgaugagcuCGCCGUa -3'
miRNA:   3'- uaCUGCCCGu-------CCCGCGGGU-----------GCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 57597 0.66 0.327817
Target:  5'- cGUGA-GGGCGcGGaCGCUcuCACGCuCGCCg -3'
miRNA:   3'- -UACUgCCCGUcCC-GCGG--GUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 59009 0.75 0.075013
Target:  5'- -cGugGGGgAGGGCGCCCA--CCGCg -3'
miRNA:   3'- uaCugCCCgUCCCGCGGGUgcGGCGg -5'
18283 3' -65.2 NC_004681.1 + 59649 0.66 0.313327
Target:  5'- --aGCGGGCGuccgaagcgguGGGCuuccaGCCaacauggcaGCGCCGCCa -3'
miRNA:   3'- uacUGCCCGU-----------CCCG-----CGGg--------UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 59801 0.67 0.26458
Target:  5'- uUGGCaGGCcgcacucccagcagGGGGCGUggCgGCGCUGCCa -3'
miRNA:   3'- uACUGcCCG--------------UCCCGCG--GgUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 60536 0.72 0.120267
Target:  5'- -aGACGGGCcgaAGGGUagUCACGCCGCa -3'
miRNA:   3'- uaCUGCCCG---UCCCGcgGGUGCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.