miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 55284 0.67 0.25415
Target:  5'- -aGAUGGGCAuuccgucgcGGGCGaUCCAUGgcuUCGCCg -3'
miRNA:   3'- uaCUGCCCGU---------CCCGC-GGGUGC---GGCGG- -5'
18283 3' -65.2 NC_004681.1 + 62518 0.68 0.248173
Target:  5'- -cGGagaGGGCGGugucGGCGCCCA-GCCauGCCa -3'
miRNA:   3'- uaCUg--CCCGUC----CCGCGGGUgCGG--CGG- -5'
18283 3' -65.2 NC_004681.1 + 51581 0.69 0.202966
Target:  5'- cUGGC-GGCAGcGGuCGCCCaguucgaugaggcgACGCUGCCu -3'
miRNA:   3'- uACUGcCCGUC-CC-GCGGG--------------UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16477 0.69 0.189877
Target:  5'- gGUGGcCGaGGCAacccacuuGGCGCCCuCGUCGCCa -3'
miRNA:   3'- -UACU-GC-CCGUc-------CCGCGGGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 29505 0.66 0.318343
Target:  5'- aGUGACGccagaccacgcgguGGUGGaGGCGCUgAUGuuGCCa -3'
miRNA:   3'- -UACUGC--------------CCGUC-CCGCGGgUGCggCGG- -5'
18283 3' -65.2 NC_004681.1 + 53359 0.67 0.292509
Target:  5'- ---cCGGG-AGGGCuauacCCUugGCCGCCu -3'
miRNA:   3'- uacuGCCCgUCCCGc----GGGugCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 6457 0.68 0.230939
Target:  5'- ---uCGGGCGuGGCGCCCAaggGCUGCa -3'
miRNA:   3'- uacuGCCCGUcCCGCGGGUg--CGGCGg -5'
18283 3' -65.2 NC_004681.1 + 44804 0.69 0.189877
Target:  5'- gGUGACGcGCuuGGuGCGCgUgACGCCGCCg -3'
miRNA:   3'- -UACUGCcCGu-CC-CGCG-GgUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 17397 0.67 0.285152
Target:  5'- --cGCGGGCAcgcgcgccagcaGGGCGUcgucuccgggauaCC-CGCCGCCc -3'
miRNA:   3'- uacUGCCCGU------------CCCGCG-------------GGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 30925 0.7 0.180666
Target:  5'- gAUGGgucCGGGCAGGuaGgCCCAgGCCGUg -3'
miRNA:   3'- -UACU---GCCCGUCCcgC-GGGUgCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 16243 0.68 0.236569
Target:  5'- -cGACGGGau-GGcCGCCaGCGCCGCg -3'
miRNA:   3'- uaCUGCCCgucCC-GCGGgUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 59801 0.67 0.26458
Target:  5'- uUGGCaGGCcgcacucccagcagGGGGCGUggCgGCGCUGCCa -3'
miRNA:   3'- uACUGcCCG--------------UCCCGCG--GgUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16132 0.68 0.225423
Target:  5'- gGUGACa-GCGGcGGCGCCCuuGCCagcaGCCg -3'
miRNA:   3'- -UACUGccCGUC-CCGCGGGugCGG----CGG- -5'
18283 3' -65.2 NC_004681.1 + 50558 0.68 0.220019
Target:  5'- -cGGuCGGGguGGGCgucGCCCACGaCGUg -3'
miRNA:   3'- uaCU-GCCCguCCCG---CGGGUGCgGCGg -5'
18283 3' -65.2 NC_004681.1 + 8894 0.69 0.199499
Target:  5'- gGUGAUGGuCAGGGCGUUgGCGaCCuuGCCg -3'
miRNA:   3'- -UACUGCCcGUCCCGCGGgUGC-GG--CGG- -5'
18283 3' -65.2 NC_004681.1 + 23462 0.69 0.196569
Target:  5'- -aGGCGGGCaGgagguugaccaccucGGGCGCCUgaaGCUGCCg -3'
miRNA:   3'- uaCUGCCCG-U---------------CCCGCGGGug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 56819 0.66 0.335247
Target:  5'- -gGAUGGGCugaccaucGGGUGUCCAgccgaugagcuCGCCGUa -3'
miRNA:   3'- uaCUGCCCGu-------CCCGCGGGU-----------GCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 30266 0.66 0.320511
Target:  5'- ---uUGGcGUAGGuccacuccGCGgCCGCGCCGCCu -3'
miRNA:   3'- uacuGCC-CGUCC--------CGCgGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 18208 0.66 0.306265
Target:  5'- gGUGcCuGGCcgGGGGCGCCgAUGCCggggauGCCg -3'
miRNA:   3'- -UACuGcCCG--UCCCGCGGgUGCGG------CGG- -5'
18283 3' -65.2 NC_004681.1 + 12296 0.66 0.299326
Target:  5'- -cGGCGcGCGGGGaaGCCCgACGCCGgguCCg -3'
miRNA:   3'- uaCUGCcCGUCCCg-CGGG-UGCGGC---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.